| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1679 |
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| Symbol | |
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| ID | 4709909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1831992 |
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| End bp | 1833764 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639856146 |
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| Product | DNA polymerase III alpha subunit-like protein |
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| Protein accession | YP_001003245 |
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| Protein GI | 121998458 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0065962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGACG ACGCCACGAC CATCGTTCCG TTCCGTGGGG GCGCGCTGGA GCGCGCCGCC
TGGGATCGGC TTTGGGATGC CGCCGATGGT GGCTGCGTGC GCCGGGCCCT CGGCGAGCGG
CGTACGCGCT ACCAGCGGCG CGTCGAGCAG GAGATGGCAG CCTTTGCACG CCTGGGTCTG
GAGCCGGGGG TGCTGCTGGA ACTCTCCTGG GTGGTGCAGG ATCTGCGGGG CCGTGGAGTC
ACCTTCGGGC CGGGGTACGG CCCGCAGAGC GGGTCGCTGC TGCTGCACCT GCTGGGTCTC
AACGGTATCG ATCCCATCGA TCACGGGTTG CCGTTCCTCG GCTTCGGGCG CGAGCTGGAG
GCCCGGCGTC TGCACTTGCG CGTCGCCACC CGCGCCGAGC AGGCGGAACT GGGCTCGGCG
TTGCGCCAGG GGGGTGCGGC CGCTGCGGCG CTGCCGGAAC AGGGGATCGA GGTCGTGGTG
GGGCGCGACC CGACGCTCGC CTTGACCTGC GAGATGGTCC GCCTGGCCCG TGCACTCAAC
GACAACCGCG ACTGCGATCC CCTGCGTTGG GCCTATCCGT GGGATGATCC GGATACCCTG
CGCCTGATCG CCCGCGGGGA GACCGCCGGG ATCCCGCTGC TGGAGGATGC GCAGTTGCAG
GAGCGCATGC GGGAGGCGGC GCCGCGCAGT CTCGAGGAAG TGACACAGGT CGTGGTGGCG
GCCCGAGATG GGGCGCCGCA CGGTCTGCTC GAGCGGTATC GGGCGGCGCG CACGGGCGCG
AGCCGTCCGC CATTGCCCCA TCCCGAGCTC GAGGACATCC TCGCCCCCAC GGGATACATC
TGGCTCTACC GCGAGCAGGT GGTCGCGGCA CTGGCCCGGT TGCTCGGTTG TGAGCTGGCC
GAGGCGGTCG GACTCGCACA ACGGCTAAGC GAGGAGGGGG GCGATGCCCA CGAGGGGGAG
CTTTCCCGGC AGCTCGGCGA GCGCATCGCT GCCCGTTGCC AGCTTCCCTA CGCGCGGGGG
CTTTATCTGC TTCGTGCCCT GCGCCAGGGC CTGGCCCAGG TGGTGGATCG GGCGGCCACG
CTGGTCGAGG TCACCGAGGC TTACCGTCAG GCCTACTACA AGGCACGCTA CCCGGCGGTT
TTCCAGGCTG CGCGGCTGAA CCGGGCGCTG CGGCGGGTGA CGCCTCGGGG CGGTGTGCGT
TATGGGGTGG GAGGCGGGCC GGATGGCGTC TGTCCGCATC GGGAGATTCT CATTCGCCTC
TGCAAGGAGG CGTTGAGTGA CGGTGTGACC GTGCTGCCAC CGGATATCAA TCGCAGCGAC
TGGGGGTTTC GCCCCCTGGA TCGGAACACG GTGATCTACG GCCTCGGGGC GATTGCGCAG
ATCGACCGGC AGACCGCCGA CCGACTGGTG CTGCGCCGCC GCGGGGGTGA GTACCGCAGC
CTGATGGATC TCATCATCCG GGGGTTCGGA GGCACCGCGC CGGCGATACA GGTTGAGCCG
CTGATCTTCT CCGGTGCGCT GGACGAGTTC GGCCGCGATC GCTGGCACTT GCGCAGGGAG
CTCGATGAGG CGCAGGCCGT CCGAGGGTGG CAATACGCCG CGGATGGGCG GACAACCCAC
TCTCTGGCGG GCGGTTTGGA TGCCTGGCAG GCCGTTCATC CCGGGGAGGG ATGGGCCTTC
CAGCGGGAAC TTGATGTGCT CGCCTGTGTC CCGTCACGTC AGTACTTTCC GGAACCTGCC
CCGGCCGAAC GGCGCTTGCG CCCGGTCCGG TGA
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| Protein sequence | MHDDATTIVP FRGGALERAA WDRLWDAADG GCVRRALGER RTRYQRRVEQ EMAAFARLGL
EPGVLLELSW VVQDLRGRGV TFGPGYGPQS GSLLLHLLGL NGIDPIDHGL PFLGFGRELE
ARRLHLRVAT RAEQAELGSA LRQGGAAAAA LPEQGIEVVV GRDPTLALTC EMVRLARALN
DNRDCDPLRW AYPWDDPDTL RLIARGETAG IPLLEDAQLQ ERMREAAPRS LEEVTQVVVA
ARDGAPHGLL ERYRAARTGA SRPPLPHPEL EDILAPTGYI WLYREQVVAA LARLLGCELA
EAVGLAQRLS EEGGDAHEGE LSRQLGERIA ARCQLPYARG LYLLRALRQG LAQVVDRAAT
LVEVTEAYRQ AYYKARYPAV FQAARLNRAL RRVTPRGGVR YGVGGGPDGV CPHREILIRL
CKEALSDGVT VLPPDINRSD WGFRPLDRNT VIYGLGAIAQ IDRQTADRLV LRRRGGEYRS
LMDLIIRGFG GTAPAIQVEP LIFSGALDEF GRDRWHLRRE LDEAQAVRGW QYAADGRTTH
SLAGGLDAWQ AVHPGEGWAF QRELDVLACV PSRQYFPEPA PAERRLRPVR
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