Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_0080 |
Symbol | |
ID | 5731973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | + |
Start bp | 104516 |
End bp | 105655 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641277202 |
Product | polysaccharide deacetylase |
Protein accession | YP_001542860 |
Protein GI | 159896613 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCGAC GTTGGATTCG TGGACTGTGG GGTTTGACGC TGTGTGGGGT GTTGTTGAGT TGTGGTCAGG GCACTGCCAC GCAAGCACCA CAAACCCAAG CTCCCACTGC AACCACAACT GTTGCTGCTA GCCCAACCAC TGCCGCCTCG CCAACGACGG CTGCTTCACC AACCTTGGCT GCAACAGCAA CTTCCGAAGC TTCACCAACC CCCGCTGGTC TCAGCGATGC CGATCTCGCG AAGTATGCAC CCAATGAGAT TGGCTGGGTT TTGGTCTTAG AATATCACTT AATTGAATCT CCCGATGCAG ACTATAGCCG TTCGCCCGAA AATTTGCGCA AGGATTTAGA GTGGTTGTAT GCCAATAATT TTTACCCAAT GACCTTGCGC GATTTGGTTG ATAACAACAT TAGCGTGCCG CTGGGCAAAT CGCCAGTTGT TTTGACCTTT GACGATTCAT CGGATGGTCA GTTCCGCTAT CTTGAAGATG GTACGCTTGA CCCAACTTCG GCCATGGGCA TTTTGCAAGC GTTTGCCGCC GAGCACCCCG ATTTTCCGGC GATTGCGGTG TTCTTCCCGT TGATCGATGT TGATGTAAAA GAGCGGGTTT TGTTTGGTCA GCCTGAGTTT GCCACCCAAA AACTTCAAGA AATTGTGGCC TTGGGCGGCG AGGTTGGCAC TCATACCTAC ACCCATCAAC GCCTCGACGA GGCTGATGCC GAGCAAATTC AATGGCAATT AGCCTTCTCG ATCAAAGAAC TTGAGGAGCG TATTGGCGAT GGTTATCAAG TCACGAGCCT GAGCTATCCC TTGGGTATGT TTCCCGAAGA TGAGAGTTTG GTCCGCGAAG GCGAATCTGA AGGTGAGAGC TATACATTAA GCGCAGCGGT TGATGTCACT GGTGGCGCTA GCCCTTCGCC CTATTCGCAA AACTTCGATC CCTACCATAT TCGCCGAACG CAAGCGGTTG ATTCGCAATT GGAATATTGG TATCAGTTGT TTGAAGAACG ACCTGATCTC AAATTTATCT CCGATGGCGA CCCCGATACA ATTACCGTGC CCAGCGAGGA AACGCTTGGC GAGGAGCAAC AAGGCCGTTT GCGCCCCGAC TTGGAAGTGC GCCGCTACGA ACGGAAGTAG
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Protein sequence | MIRRWIRGLW GLTLCGVLLS CGQGTATQAP QTQAPTATTT VAASPTTAAS PTTAASPTLA ATATSEASPT PAGLSDADLA KYAPNEIGWV LVLEYHLIES PDADYSRSPE NLRKDLEWLY ANNFYPMTLR DLVDNNISVP LGKSPVVLTF DDSSDGQFRY LEDGTLDPTS AMGILQAFAA EHPDFPAIAV FFPLIDVDVK ERVLFGQPEF ATQKLQEIVA LGGEVGTHTY THQRLDEADA EQIQWQLAFS IKELEERIGD GYQVTSLSYP LGMFPEDESL VREGESEGES YTLSAAVDVT GGASPSPYSQ NFDPYHIRRT QAVDSQLEYW YQLFEERPDL KFISDGDPDT ITVPSEETLG EEQQGRLRPD LEVRRYERK
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