| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0018 |
|---|
| Symbol | ppc |
|---|
| ID | 8709370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 19084 |
|---|
| End bp | 21840 |
|---|
| Gene Length | 2757 bp |
|---|
| Protein Length | 918 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646482141 |
|---|
| Product | phosphoenolpyruvate carboxykinase (GTP) |
|---|
| Protein accession | YP_003373289 |
|---|
| Protein GI | 283782535 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2352] Phosphoenolpyruvate carboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0134547 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAG AAAATCAGCA GGTTACTCCG GCAGACGCAA CTATTGTTAC GTCTGGCTTA
GGGCGAAAAG GCCCAGAGGA GCGTGACCTT CCAGCATCAC TTAAGCAAGA CATGGATTTG
TGCTTGCATA TTCTTCGCGA TGTTCTTGGC GAATTCGATG AAAAATTATT AGCAGTATTC
GACGATGTGC GTTTGAATGC TGTAGAAGCT AGTGCGGCTC ATTTTGCGCA AATGGTAGAC
GCAAAAGTAA CTGCAGATGA TGGCTTAAGT AAAGCTGTTA GCAAGCTCAA CGGAATGAAT
TTGCACGATA CGCAGCTTTT AGCTCGTGCT TTCGCAACAT ATTTCCACTT GGCAAATTTG
TGCGAGGAAA ATTATCGTGT TTCTGTACTT CATCAGCGTG AATGTGAAGT TGAAGATTCA
TTGCCTGTTG ATCCAGTTAA CGAACTAACT TGTGCTTATC ACAAGTTGCT CACTGAAATG
AGCCCTGCTG AAGCGAAAGA ATTGCTTGCA AAGCTTGAGT TTCATCCTGT ATTTACCGCG
CACCCAACCG AAGCTCGTCG TAAAGCCGTT GCAGGTAAGA TTCGCAGAAT TTCGCAATTA
CTAAGCGAAC ATCATCGTTT AGGCGGATCT GATAAGCGCG AAAATTATCG ACGTCTCTAT
AACGAAATTG ATGCGCTTCT TCGCACTTCT CCGATTGCTT TGAAGAAGCC AACTCCAGTT
GAAGAATCTG ACACCATTCT CGACATTTTT GACGCCACTT TGTTTGACAC GATTCCAGTC
GTGTATCGTC GATTTGACGA TTGGCTGCTT GGTAAGAAGG CTGGATTAGT TCCTCCGCGT
TGCCCTGCAT TCTTCCATCC AGGAAGCTGG ATTGGTTCAG ATCGAGATGG CAATCCTAAT
GTGACAGCTA AAGTGAGCCG TCAAGTCGCT CGAAAGTTTA GCGATCACGT GCTTGCAGCT
TTGGAGAATC GCACGCGCGA AGTTGGCAAG TGCTTAACTA TGGAAACTCG CACAACTCCT
CCAAGCGTGG AGTTGCTTGA GTTATGGAAT CGTCAGCGCG AAATGAGCGA ACAGCTTACA
GAAAACGCTT CAGACGTTTC TAATAGTGAG CCACATCGTG CAGTAATGTT GGTAATGGCT
GACCGTTTGC ATCGCACTAT TAGCCGCGAT ACGGATTTGA TGTATCATTC TTGCGAAGAT
TTCATTGAGG ATTTGCAAAT TGTGCAACGC TCTTTGGCAG AAGGCGGAGA TCCTCGTGCT
GCATATGGTC CTTTGCAGGA TTTGATTTGG CAAGCGCAAA CCTTTGGATT CCACATGGTT
GAAATGGAAT TCCGTCAGCA TTCTCTCGTG CATTCTCGCG CTTTGGAAGA TATTCGCGAA
CATGGATTGC ATGGCGAACG CGGTCCGCTT CAGCCAATGA CTCGTGAAGT ACTCGATACG
TTCCGCGCTT TAGGAGCAAT TCAAAAGCGC AACGGTATGC GCGCTGCTCG ACGTTATATT
ATTTCCTTCG CAAAATCTGC TCAGCATGTA CGTGACGTAT TTGAGCTAAA TCGTCTTGCT
TTCGCTCACC CACAGGATGC GCCAACAATC GACGTCATTC CGCTGTTTGA GCAGTTGGAA
GATTTGCAAA ACTCTGTAAA TGTGCTTGAG GAGATTATTA AAATTCCTGA AGTGCAAGCT
CGTCTTAAGG CTACTGGCCG CAAGATGGAA GTTATGCTTG GCTACTCGGA TTCTTCCAAG
GATGCTGGTC CTACTTCCGC AACGCTTGCT TTGCATTCTG CTCAGGAGCG CATTGCTAAG
TGGGCTAAGA AGCACGATAT TGATTTGACA CTGTTCCACG GCCGCGGCGG TGCTGTTGGT
CGCGGTGGCG GTCCTGCAAA CCGTGCAGTG CTTGCTCAGC CAGTTGGTTC CGTCAACTGC
CGCTTCAAGC TTACTGAGCA GGGCGAGGTT ATTTTCGCAC GATATGGCAA TCCAATTCTT
GCTATTCGTC ACGTTGAATC CGTTGCTTCT GCAACTTTGC TTCAGTCTTC GCCAAGTGTT
GAGAAAACTA ACACTGATAT GACGAAGAAG TATGCGGATA TGGCTGCAAA ACTTGATGTT
GCAGCTCATG AGCGTTTCCT TGATTTGCTG CAAACGGATG ACTTTACTCC ATGGTTCTCT
ACGGTTACGC CGCTTAGTGA GATTGGTTTG CTTCCAATCG GTTCTCGCCC AGCTAAGCGC
GGTTTGGGTG CGAAGTCGTT GGATGATTTG CGCACAATCC CGTGGGTGTT CTCCTGGGCT
CAGGCTCGCA TTAACTTAGC AGCATGGTAC GGATTGGGTA CTGCTTGCGA AAAGTTTGGC
GATTTGGAAA CTTTGCGTCG CGCTTACGAA GAGTGGCCGC TGTTTAGTAC TTTTATTGAC
AATATTGAGA TGTCTTTGGC TAAAACGGAT GAGCGTATTG CTCGCATGTA CTTAAGCCTT
GGAGATCGCG AAGATTTGAG TGATAAAGTA CTTTCAGAAA TGCAGCTTAC TCGCAAGTGG
GTTTTGCAAA TTGTTGACGA CAAGTGGCCT TTGCAACATC GTCACGTGCT CGGTCAGGCA
ATCCGCGTGC GCTCGCCTTA TGTTGACGCG CTGTCTGTAA TCCAGTCGCT TGCATTGCAC
AAGCTTCGCA ACAAGGTAGA CAAAGAAGAG CTTAGCGAAA GCCAACAGGC AGAGTTCATC
TACCTTATTC TTTGCACTGT TTCTGGTGTT GCTGCAGGCT TGCAGAATAC TGGATGA
|
|---|
| Protein sequence | MATENQQVTP ADATIVTSGL GRKGPEERDL PASLKQDMDL CLHILRDVLG EFDEKLLAVF
DDVRLNAVEA SAAHFAQMVD AKVTADDGLS KAVSKLNGMN LHDTQLLARA FATYFHLANL
CEENYRVSVL HQRECEVEDS LPVDPVNELT CAYHKLLTEM SPAEAKELLA KLEFHPVFTA
HPTEARRKAV AGKIRRISQL LSEHHRLGGS DKRENYRRLY NEIDALLRTS PIALKKPTPV
EESDTILDIF DATLFDTIPV VYRRFDDWLL GKKAGLVPPR CPAFFHPGSW IGSDRDGNPN
VTAKVSRQVA RKFSDHVLAA LENRTREVGK CLTMETRTTP PSVELLELWN RQREMSEQLT
ENASDVSNSE PHRAVMLVMA DRLHRTISRD TDLMYHSCED FIEDLQIVQR SLAEGGDPRA
AYGPLQDLIW QAQTFGFHMV EMEFRQHSLV HSRALEDIRE HGLHGERGPL QPMTREVLDT
FRALGAIQKR NGMRAARRYI ISFAKSAQHV RDVFELNRLA FAHPQDAPTI DVIPLFEQLE
DLQNSVNVLE EIIKIPEVQA RLKATGRKME VMLGYSDSSK DAGPTSATLA LHSAQERIAK
WAKKHDIDLT LFHGRGGAVG RGGGPANRAV LAQPVGSVNC RFKLTEQGEV IFARYGNPIL
AIRHVESVAS ATLLQSSPSV EKTNTDMTKK YADMAAKLDV AAHERFLDLL QTDDFTPWFS
TVTPLSEIGL LPIGSRPAKR GLGAKSLDDL RTIPWVFSWA QARINLAAWY GLGTACEKFG
DLETLRRAYE EWPLFSTFID NIEMSLAKTD ERIARMYLSL GDREDLSDKV LSEMQLTRKW
VLQIVDDKWP LQHRHVLGQA IRVRSPYVDA LSVIQSLALH KLRNKVDKEE LSESQQAEFI
YLILCTVSGV AAGLQNTG
|
|---|
| |