| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_1702 |
|---|
| Symbol | |
|---|
| ID | 6975117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | - |
|---|
| Start bp | 1883443 |
|---|
| End bp | 1885008 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643391229 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_002276086 |
|---|
| Protein GI | 209543857 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAC GCCTTAACCG CCAGATGCTC GCTCTGACGA GCATGCTCCT GCTTAGCGCC
TGCACGGTCG GTCCGGACTA TCACAAGCCC GATCTCGCCA GCGTGCCGCA CTGGCATCGC
GGCCTGCCGG ATGCCGAAAG CCATCCCGAG GAAAGCCCCG CCGATCCGCA ATGGTGGACG
ATCTATCGCG ATCCGGTGCT GACCGCGCTG GAACAGCAGG TCGCGTCCGC CAATCTGGAT
CTGCGCGCGA GCGCCTATCG TCTGGCGGAG AGCCTGGCCG AGCGGCGGAT TGCGAGCGCG
GCACAGTTCC CACATGTGGA GGGGAATGCC TCCTATGCAC GCGAGCGGGC CAGCACCAAC
GGTATCCTCG GCCTGCTTGG CACGCTGGAG CGCGCCGGCG CGGGCGATGT CGCCAGCGGC
GCGCAGGGCT TCGGCCCTGT GGCCGTGCCG GGCACGGTCG GCAATCCGTC CTTCAACCTG
CCGCAATACG GCATGAGCGC GTCATGGGAG GTCGATCTCT GGGGTCATGT CCGGCGCCAG
GTCGAGGCCG CCAACGCGGC GGTCAAGGCG ACGCAGGACA TGCAGCGGGA TGTCCTGGTC
TCGCTGATGG CCGAGACCGC GCAGGATTAT CTCGATCTGC GTGGCGTGCA GGCGCAGATC
GCCATCGTCG GCCGCAATAT CGACACTGCC CGGCACAGCG TTGTCCTGAC GGGCCTGCGC
TTTGCGCAAG GTGCCTCCAC CCAACTGGAC GTAGCGGACT CGCGCGGACA GCTCAGCGAA
TTCCAGTCGC GCCTGCCGAT CCTGCAGAGC CAGGAAGTGC ATCTGATCAA CGCGCTGAGC
TTTCTGGTGG CACGCGAGCC GGGTGCGCTC CGGGCGCAGC TCGCCACGCC GGCCCCGATT
CCGCCGGTAC CCGATGCGGT GCCCGTCGGC CTGCCGTCGG AACTGGCGGA GCGTCGGCCC
GATATTCGGA TGGCCGAGGA GCAGTTGCAT GTCGCCACCG CCAGCATCGG TGTGGCCGTG
GCGGATTTCT TTCCGCGCGT GACGCTCTCC GGCAGCCTCG ACGTGCAAGC GCTGCAGTTC
AGCGGGCTCG GGTCCTGGGC GTCGCGGCAA TACGGGTTCG GCCCGACCAT GACGCTGCCT
CTGTTCGAGG GTGGTCGCCT GACCGGGCAA TTGCGTCTGC GCCGGGCGCA GCAGAAGGAA
GCGGCGATCA CCCTGCAGCG CACCATCCTC AAGGCATGGC AGGAGATCGA CGACGCGATG
GCCGATTTCT CCGCCGCCCA GCAGCAGCGC GACCGCCTGA AGGAGACAGT GGCCCAGAAC
GAGACGGCCG TACGTCTGGC CCAGCAGCAA TACGTGCAGG GGGCGTCGGA TTTCCTGAAC
GTGCTGACCT TGCAGAACGC GCTTCTGGCC AGCCAGAACC AGCTCGTGCG GTCGACGACG
GCAGTTTCGG TCTCGGTGGC CCGCCTGTAT CGCGCGCTCG GCGGTGGCTG GGAGGCGCGC
TATCCGGTCG CGACGGCCCA GCGGGCGGCC ATCCGGCAAG AGGGGCAGGG AGGTCGACAA
GGATGA
|
|---|
| Protein sequence | MITRLNRQML ALTSMLLLSA CTVGPDYHKP DLASVPHWHR GLPDAESHPE ESPADPQWWT
IYRDPVLTAL EQQVASANLD LRASAYRLAE SLAERRIASA AQFPHVEGNA SYARERASTN
GILGLLGTLE RAGAGDVASG AQGFGPVAVP GTVGNPSFNL PQYGMSASWE VDLWGHVRRQ
VEAANAAVKA TQDMQRDVLV SLMAETAQDY LDLRGVQAQI AIVGRNIDTA RHSVVLTGLR
FAQGASTQLD VADSRGQLSE FQSRLPILQS QEVHLINALS FLVAREPGAL RAQLATPAPI
PPVPDAVPVG LPSELAERRP DIRMAEEQLH VATASIGVAV ADFFPRVTLS GSLDVQALQF
SGLGSWASRQ YGFGPTMTLP LFEGGRLTGQ LRLRRAQQKE AAITLQRTIL KAWQEIDDAM
ADFSAAQQQR DRLKETVAQN ETAVRLAQQQ YVQGASDFLN VLTLQNALLA SQNQLVRSTT
AVSVSVARLY RALGGGWEAR YPVATAQRAA IRQEGQGGRQ G
|
|---|
| |