| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3939 |
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| Symbol | |
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| ID | 6780803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4475992 |
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| End bp | 4476774 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642769934 |
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| Product | lytic transglycosylase catalytic protein |
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| Protein accession | YP_002140727 |
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| Protein GI | 197120300 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.126837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGATAA ATCCGGTAGC CACAGCGCCC GGCGTTGCCG CGGCCAGGAA GGTAGGGGCC
GCGTCTGAAA CCAACACTAC TCGTTTCGAG GAGTACCTGG CGCAGAAGGG GAGCGAAGGC
GAGGTCCCGC CCGAGGCGGC GGCCGAGCTT TTGCGCCTGA AGATGCTCAG CTCGGCGCTC
GCCATCGGCG CGGATCCCGA CCAGGCCGCC GCCCCGAGGC AGCTCGATGT GCAGGGGGTG
TTGAGCCGCT TCATGGAGCA GATTCCCAAG GGACAGACCG GCACCCAGAT TCAAGCGCCC
GGGTCGGCAG ACGGGCATGG TCCCGAGGCG GCGTTCCAGG CGCAGCAGGC TCATTTCGAG
GCGGGCAAAC TCCCGGAAGC AGGAAGCAGT GCCGGCGACG GCAGCTTGGA CGCCATCATC
GACAAGGCAT CACAGCGCTA CGGAATCGAC AGCGGCCTCA TCCGGGCCGT GATCAAGGCT
GAGAGCAATT TCAACCCGAA CGCGGTCTCC TCCGCTGGTG CCCAAGGGCT GATGCAGTTG
ATGCCGGCCA CTGCCAGGGG GCTCGGCGTG AGCGACTCTT TTGACCCGGA ACAAAACGTC
ATGGCAGGGA CCAGGTTCCT GAAGGACATG TTGCGGCGCT ATAAAGGGAA TCTGGACGAG
GCCTTGGCGG CGTACAACTG GGGCCCGGGG AACGTCGACC GCCACGGCGT CGACATGCTT
CCCAGGGAAA CCAGGCAGTA CCTGGCGAAG GTGAAAGGTT ACTTTACCCA GTACGTCGCC
TAG
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| Protein sequence | MSINPVATAP GVAAARKVGA ASETNTTRFE EYLAQKGSEG EVPPEAAAEL LRLKMLSSAL
AIGADPDQAA APRQLDVQGV LSRFMEQIPK GQTGTQIQAP GSADGHGPEA AFQAQQAHFE
AGKLPEAGSS AGDGSLDAII DKASQRYGID SGLIRAVIKA ESNFNPNAVS SAGAQGLMQL
MPATARGLGV SDSFDPEQNV MAGTRFLKDM LRRYKGNLDE ALAAYNWGPG NVDRHGVDML
PRETRQYLAK VKGYFTQYVA
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