| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3528 |
|---|
| Symbol | |
|---|
| ID | 6780391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 4040841 |
|---|
| End bp | 4042187 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642769523 |
|---|
| Product | sun protein |
|---|
| Protein accession | YP_002140317 |
|---|
| Protein GI | 197119890 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases
[COG0781] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase
[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCCAGCA AAAACCCGCG CCGCGCCGCC TTCGATATCC TGCTCCGGAT CGAGAAAGAA
AAGTCCTTCG CAGACATCCT GATTGACCAC GAACTTTCCA AGGACATCAT CAAGGGAGCC
GACCGGGGCC TGCTCACCGA GCTGGTCTAC GGCGTGCTGC GCAGGCAGGG GACGCTCGAT
TACATCATCT CCCAGTTTTC CAAACAAAGG CCGGAGAAAC TTGAGCTTTT CGTGCGGCTC
CTGTTGCGCC TGGGGATTTA CCAGTGCTTC TTCCTGGACC GGGTCCCGGT GTCGGCCGCC
GTCAACGAGA CGGTGAACCT GGCCAAGGAA CTGGCGCCGC GCGCCTCCGG CTTCATCAAC
GCGGTGCTCA GAAACGCCGA CCGCGGCCGC GACACCATAG CCTACCCCGA CCGCGCCGAG
CGCCCCGCCG AATACCTGGC CGCGCGCTAC TCCCATCCCG CCTGGCTCGC CCAGCAGTGG
TGCGACCAGC TAGGGCTCGA AGCAGCGGAG GAGCTGGCAG CCGCCATGTC CGAACCGCCC
CCCTTGACCG TGAGGGTCAA CACGCTGCGC ATCACCCGCG AAGAGCTGAT CCAGAGGTTG
GCCGGGGAGG GGGTGAGCTG CAGCGCGACC TCGTGGTCCC CGGACGGCAT CCGCCTGAAC
CAGTCCGGCC AGATCACCAG GCTTCCTTCC TTCAGGGACG GCCTCTTCAC CGTGCAGGAC
GAATCGTCGC AGCTGGCCCC GCTGTTCCTG GCCCCTGGAA AAGGGGAGCG GGTGCTGGAT
GCCTGCGCCG CCCCCGGCGG CAAGACTACC CAGATAGCGC AGCTGATGCA GGACTCCGGC
GAGATCTACG CCTGCGACGT GAACAACAAG AAGCTCAGGC TGATCAAGGA GACCTGCGAC
CGGCTGGGGA TCAACTCGGT GCGCACCTTC ACTATGGACG CCACCGCCCC CTCCAACGCC
ATCAAGGAGA CCACCTTCCA CCGCATCCTG GTGGACGCCC CCTGCTCGGG CCTGGGCGTG
ATCAGGCGCA ACCCCGAGGG GAAGTGGAGC AAGTCCGGCG ACGACCTGCT GCAACTGGCG
CGCACCCAGG TCAGCATCCT GGAGAACCTC TGCAGGTACC TGGAGCCGAA GGGGACCATC
CTCTACGCCA CCTGCTCGAC CAGCGTCCAG GAGAACGAGT ACGTGGTGGA CAGCTTCCTC
GCGCAGCATC CGGAGTTCGT CGTGGAAGAC CTGCGCCCGC TCTTCCCTCA GTATGCGCCG
CTCTTCACCG AGCGCGGCTT CTTCAGGAGC TGGCCGCACC GCGACGGCAT GGACGGCTTC
TTCTCGGCGC GCCTGAAGAG GAAGTAG
|
|---|
| Protein sequence | MSSKNPRRAA FDILLRIEKE KSFADILIDH ELSKDIIKGA DRGLLTELVY GVLRRQGTLD
YIISQFSKQR PEKLELFVRL LLRLGIYQCF FLDRVPVSAA VNETVNLAKE LAPRASGFIN
AVLRNADRGR DTIAYPDRAE RPAEYLAARY SHPAWLAQQW CDQLGLEAAE ELAAAMSEPP
PLTVRVNTLR ITREELIQRL AGEGVSCSAT SWSPDGIRLN QSGQITRLPS FRDGLFTVQD
ESSQLAPLFL APGKGERVLD ACAAPGGKTT QIAQLMQDSG EIYACDVNNK KLRLIKETCD
RLGINSVRTF TMDATAPSNA IKETTFHRIL VDAPCSGLGV IRRNPEGKWS KSGDDLLQLA
RTQVSILENL CRYLEPKGTI LYATCSTSVQ ENEYVVDSFL AQHPEFVVED LRPLFPQYAP
LFTERGFFRS WPHRDGMDGF FSARLKRK
|
|---|
| |