Gene Gbem_3394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3394 
Symbol 
ID6780257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp3909120 
End bp3910550 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content61% 
IMG OID642769390 
Productprotease Do 
Protein accessionYP_002140185 
Protein GI197119758 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0792545 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGCA TCAGACTCCT CGCTGTCTGC CTTATTGTCT GCACGTTAAT GATAGCCTGC 
AAGAAAAAGG AGCAGGCATC CTTCTACGAA TCCGAGCGAA AGGAGAGCGT CCCGGCCCCG
GTCCAGGAGG TCCCCAAGGA CATCCTGGTG ACGCAACAGG CCTTCACCAC GCTGGTCAAG
ACCGTGACCC CCTCCGTCGT CAACATCTCC ACCATCGGCA AGAAAAAGCT GGTCCGCCCC
TTCTTCGAGT CGTCACCTTT CTTCGACGAG TTCTTCGGCG AAAACGCACG CCCGCAGTAT
CGAAGGGAAC ATAGCTTAGG CTCCGGCTTC ATCCTGAACA AGGAAGGGTA TATCGTCACC
AACGACCACG TGGTGCGGGA CGCCGAGACC ATACAGGTGA AGCTTTCCAA CGAAAGCGTC
TACAAGGGGA AGGTGATCGG CTCGGACCCG AAGACGGACA TCGCGGTGAT AAAGATCGAC
GCCAAAGAGC CGCTGCCTGC AGCGGTCCTC GGGGATTCCA ACAAGCTGCA GGTCGGGCAG
TGGGCCGTCG CCATCGGGAA CCCCTTTGGC CTGGACCGCA CCGTCACCGT CGGCGTTGTC
TCGGCAACCG GCAGGTCGAA CATGGGGATC GAGACCTACG AGGATTTCAT ACAGACCGAC
GCCTCCATCA ACCCCGGAAA CTCCGGCGGA CCGCTGCTTA ACATCTACGG CGAGGTGATC
GGAATCAACA CAGCCATCGT CGCCGCCGGA CAGGGAATCG GCTTCGCCAT CCCGGTAAAC
ATGGCAAAGC AGGTGGTGAC GCAGTTGATC AGCAAGGGGA ACGTAAGCCG CGGCTGGCTC
GGCGTCTCGA TCCAGTCGGT GACCGAAGAG ATGGCAAACT CCTTCGGGCT TCCCAAAGCG
TACGGCGCGC TGGTGAACGA CGTCGTTCCA GGGGGGCCGG CTGCGAAGGC CGGCGTCATG
CAGGGGGACG TAATCACGAG CTTTGCCGGG ACGGCCGTAA AGGACGTGCG CCAGTTGCAG
CGCCTGGTCG GCGAAACACC CATCGGCAAG AAAGTTCCGG TGGAGCTCTA TCGCGACGGC
AAGAAGATCA ACGTCCAGAT AACCACTGCA CCTGCCGACA GCGCCCAGGC ACAGACACAA
AGACCTGCCG AGCGGGAAGC GGGAGCCCTG GGGCTCTCGG TCGAGGAACT GGGAGCGGAG
ATGCGTTCCC GCGGCGTCAC CGGCGTGGTG GTGAGCGACC TCGAACCGGG CGGGATCGCG
GAAGAAAGCG GCATCCAGCG CGGCGACATC ATCGTATCCG TGAACCAGAA GAAAGTGAGA
AATCTGGCCG AGTACCAGAA GGCAATGGCG GACGCCGGCA AACGCGGCGC CGTCGCGCTC
CTAGTCCGGA GAGGCTCGGC CAGCATCTAC TTCGCCCTAA AATTAAGATA G
 
Protein sequence
MKSIRLLAVC LIVCTLMIAC KKKEQASFYE SERKESVPAP VQEVPKDILV TQQAFTTLVK 
TVTPSVVNIS TIGKKKLVRP FFESSPFFDE FFGENARPQY RREHSLGSGF ILNKEGYIVT
NDHVVRDAET IQVKLSNESV YKGKVIGSDP KTDIAVIKID AKEPLPAAVL GDSNKLQVGQ
WAVAIGNPFG LDRTVTVGVV SATGRSNMGI ETYEDFIQTD ASINPGNSGG PLLNIYGEVI
GINTAIVAAG QGIGFAIPVN MAKQVVTQLI SKGNVSRGWL GVSIQSVTEE MANSFGLPKA
YGALVNDVVP GGPAAKAGVM QGDVITSFAG TAVKDVRQLQ RLVGETPIGK KVPVELYRDG
KKINVQITTA PADSAQAQTQ RPAEREAGAL GLSVEELGAE MRSRGVTGVV VSDLEPGGIA
EESGIQRGDI IVSVNQKKVR NLAEYQKAMA DAGKRGAVAL LVRRGSASIY FALKLR