Gene Gbem_0950 details

Gene Information

• Locus tag: Gbem_0950
• Symbol: rpsE
• ID: 6783792
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 1105594
• End bp: 1106082
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642766927
• Product: 30S ribosomal protein S5
• Protein accession: YP_002137767
• Protein GI: 197117340
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00386761
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTTAAGA TCAATGCCAG TGAAATGAAT CTTACCGATA GGGTCGTCCA CATAAGCCGC 
GTAGCCAAGG TGGTGAAGGG TGGCCGCAGG TTCAGCTTCT CCGCCCTCGT GGTGGTAGGC 
GACGGTAACG GCTGCGTGGG CTACGGCCTG GGCAAGGCCA ACGAAGTGCC GGAAGCAATC 
CGCAAAGGGG TCGAGCAGGC CAAGAAGAAC CTGATCAAGG TTCCCATCGT GGCCGGGCAG 
ACCATCCCGT TCGAGATCCT CGGCTGCTTC GGCGCAGGCA AGGTTCTCAT GATGCCCGCT 
TCCCCGGGTA CCGGCGTTAT CGCAGGCGGT GCCGCCCGCG CGGTATTCGA GTCGGCAGGC 
CTGCACAACA TCCTTGCCAA GTGCCTGGGC TCCAACAACC CGCACAACGT GGTCAAGGCC 
GCATTCGCGG GTCTCTCCCG TCTCAAGACT GCGGAAGAGC TGATGGCGCG CCGCGGCATC 
ACCGAATAG 

 

Protein sequence

MLKINASEMN LTDRVVHISR VAKVVKGGRR FSFSALVVVG DGNGCVGYGL GKANEVPEAI 
RKGVEQAKKN LIKVPIVAGQ TIPFEILGCF GAGKVLMMPA SPGTGVIAGG AARAVFESAG 
LHNILAKCLG SNNPHNVVKA AFAGLSRLKT AEELMARRGI TE