Gene EcolC_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_0048 
Symbol 
ID6068440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp49661 
End bp49927 
Gene Length267 bp 
Protein Length88 aa 
Translation table11 
GC content59% 
IMG OID641599451 
Productphage transcriptional regulator, AlpA 
Protein accessionYP_001723061 
Protein GI170018107 
COG category[K] Transcription 
COG ID[COG3311] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCTG TTTTTTCTTC CCCGTCTCCC TCCCCTGTGA CGCCACTGAT GCCGCTGCCG 
GACATCACGC AGGAGCGTTT TTTACGTCTG CCGGAAGTGA TGCACCTGTG CGGCCTGTCA
CGCTCGACCA TCTATGAACT CATCCGTAAG GGGGAATTTC CGCCGCAGGT GAGTCTTGGC
GGTAAAAATG TGGCCTGGCT GCACTCTGAA GTCACCGCAT GGATGGCCGG GCGCATTGCC
GGACGCAAAC GGGGGTACGA CGCATGA
 
Protein sequence
MQAVFSSPSP SPVTPLMPLP DITQERFLRL PEVMHLCGLS RSTIYELIRK GEFPPQVSLG 
GKNVAWLHSE VTAWMAGRIA GRKRGYDA