| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3330 |
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| Symbol | tolC |
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| ID | 6142633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3406637 |
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| End bp | 3408118 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618159 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001745309 |
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| Protein GI | 170682545 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAT TGCTCCCCAT TCTTATCGGC CTGAGCCTTT CTGGTTTCAG TTCGTTGAGC
CAGGCCGAGA ACCTGATGCA AGTTTATCAG CAAGCACGCC TTAGTAACCC GGAATTGCGT
AAGTCTGCCG CCGATCGTGA TGCTGCCTTT GAAAAAATTA ATGAAGCGCG CAGTCCATTA
CTGCCACAGC TAGGTTTAGG TGCAGATTAC ACCTATAGCA ACGGCTACCG CGACGCGAAC
GGCATCAACT CTAACGCGAC CAGTGCGTCC CTGCAGTTAA CTCAATCCAT TTTTGATATG
TCGAAATGGC GTGCGTTAAC GCTGCAGGAA AAAGCAGCTG GGATTCAGGA CGTCACGTAT
CAGACCGATC AACAAACTTT GATCCTCAAC ACCGCGACCG CTTATTTCAA CGTGTTGAAT
GCTATTGACG TTCTTTCCTA TACACAGGCG CAAAAAGAAG CGATCTACCG TCAATTAGAT
CAAACCACCC AACGTTTTAA CGTGGGCCTG GTAGCGATCA CTGACGTGCA GAACGCCCGC
GCACAGTACG ATACCGTGCT GGCGAACGAA GTGACCGCAC GTAATAACCT TGATAACGCG
GTAGAGCAGC TGCGCCAGAT CACCGGTAAC TACTATCCGG AACTGGCGGC GCTGAATGTC
GAAAACTTTA AAACCGACAA ACCACAGCCG GTTAACACGC TGCTGAAAGA AGCCGAAAAA
CGCAACCTGT CGTTGTTACA GGCGCGCTTG AGCCAGGACC TGGCGCGCGA GCAAATTCGC
CAGGCGCAGG ATGGTCACTT ACCGACTCTG GATTTAACGG CTTCTACCGG GATTTCTGAC
ACCTCTTATA GCGGTTCGAA AACCCGTGGT GCCGCTGGTA CCCAGTATGA CGATAGCAAT
ATGGGCCAGA ACAAAGTTGG CCTGAGCTTC TCGCTGCCGA TTTATCAGGG CGGAATGGTT
AACTCGCAGG TGAAACAGGC CCAGTACAAC TTTGTTGGTG CCAGCGAGCA ACTGGAAAGC
GCGCATCGTA GCGTCGTACA AACCGTACGT TCCTCCTTCA ACAACATTAA TGCTTCTATC
AGTAGCATTA ACGCCTACAA ACAAGCCGTA GTTTCCGCTC AAAGCTCATT AGACGCGATG
GAAGCGGGTT ACTCGGTCGG TACGCGTACC ATTGTTGATG TGTTGGATGC GACCACCACG
CTGTACAACG CCAAGCAAGA GCTGGCAAAT GCGCGTTATA ACTACCTGAT TAACCAGTTG
AATATTAAAT CAGCTCTGGG TACGTTGAAC GAGCAGGATC TTCTGGCACT GAACAATGCG
CTGAGCAAAC CGGTTTCCAC TAATCCGGAA AACGTTGCCC CGCAAACGCC GGAACAGAAT
GCTATTGCTG ATGGTTATGC GCCTGATAGC CCGGCACCCG TCGTTCAGCA AACATCCGCA
CGCACTACCA CCAGTAACGG TCATAACCCT TTCCGTAACT GA
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| Protein sequence | MKKLLPILIG LSLSGFSSLS QAENLMQVYQ QARLSNPELR KSAADRDAAF EKINEARSPL
LPQLGLGADY TYSNGYRDAN GINSNATSAS LQLTQSIFDM SKWRALTLQE KAAGIQDVTY
QTDQQTLILN TATAYFNVLN AIDVLSYTQA QKEAIYRQLD QTTQRFNVGL VAITDVQNAR
AQYDTVLANE VTARNNLDNA VEQLRQITGN YYPELAALNV ENFKTDKPQP VNTLLKEAEK
RNLSLLQARL SQDLAREQIR QAQDGHLPTL DLTASTGISD TSYSGSKTRG AAGTQYDDSN
MGQNKVGLSF SLPIYQGGMV NSQVKQAQYN FVGASEQLES AHRSVVQTVR SSFNNINASI
SSINAYKQAV VSAQSSLDAM EAGYSVGTRT IVDVLDATTT LYNAKQELAN ARYNYLINQL
NIKSALGTLN EQDLLALNNA LSKPVSTNPE NVAPQTPEQN AIADGYAPDS PAPVVQQTSA
RTTTSNGHNP FRN
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