| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0072 |
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| Symbol | tbpA |
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| ID | 6146880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 81343 |
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| End bp | 82326 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641614973 |
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| Product | thiamine transporter substrate binding subunit |
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| Protein accession | YP_001742189 |
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| Protein GI | 170682457 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.338985 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTTAAAAA AATATCTTCC CCTGCTGTTG CTGTGCACAG CGCCCGTTTT CGCTAAACCC
GTTCTGACCG TCTACACCTA CGATTCCTTC GCCGCCGACT GGGGGCCTGG TCCGGTGGTT
AAAAAAGCCT TTGAAGCCGA CTGTAATTGC GAACTGAAAC TGGTGGCTCT GGAAGATGGC
GTTTCGTTTC TCAACCGTCT ACGGATGGAA GGCAAAAACA GCAAAGCCGA TGTGGTGCTG
GGGCTGGATA ACAATCTGTT AGATGCCGCC AGCAAAACCG GGCTGTTTGC TAAAAGCGGT
GTGGCTGCGG ATGCCGTTAA CGTTCCCGGC GGCTGGAATA ATGACACTTT CGTCCCGTTT
GATTACGGCT ATTTCGCCTT CGTCTATGAC AAGAACAAAC TGAAAAATCC GCCGCAAAGC
CTGAAAGAGC TGGTTGAAAG CGATCAAAAC TGGCGGGTGA TTTATGAAGA TCCACGTACC
AGTACACCGG GGCTGGGTCT GTTGCTATGG ATGCAAAAAG TCTATGGCGA TAACGCCCCG
CAAGCCTGGC AGAAACTGGC GAAGAAAACT GTCACGGTCA CCAAAGGCTG GAGCGAAGCC
TACGGCCTGT TTTTAAAAGG CGAAAGCGAT CTGGTTCTGA GTTACACCAC CTCTCCGGCT
TATCACATTC TCGAAGAGAA GAAAGATAAC TACGCCGCCG CGAACTTCAG CGAAGGTCAC
TATCTGCAGG TGGAAGTCGC CGCCCGCACC GCTGCCAGCA AGCAGCCAGA GCTGGCGCAA
AAATTTCTCC AGTTTATGGT TTCTCCGGCT TTCCAGAATG CGATCCCAAC CGGCAACTGG
ATGTATCCGG TGGCAAATGT CACGCTGCCT GCCGGGTTTG AACAATTGAC CAAACCGGCA
ACCACGCTGG AGTTCACGCC AGCCGAAGTG GCGGCACAAC GTCAGGCATG GATTAGCGAA
TGGCAACGCG CCGTCAGCCG TTAA
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| Protein sequence | MLKKYLPLLL LCTAPVFAKP VLTVYTYDSF AADWGPGPVV KKAFEADCNC ELKLVALEDG
VSFLNRLRME GKNSKADVVL GLDNNLLDAA SKTGLFAKSG VAADAVNVPG GWNNDTFVPF
DYGYFAFVYD KNKLKNPPQS LKELVESDQN WRVIYEDPRT STPGLGLLLW MQKVYGDNAP
QAWQKLAKKT VTVTKGWSEA YGLFLKGESD LVLSYTTSPA YHILEEKKDN YAAANFSEGH
YLQVEVAART AASKQPELAQ KFLQFMVSPA FQNAIPTGNW MYPVANVTLP AGFEQLTKPA
TTLEFTPAEV AAQRQAWISE WQRAVSR
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