| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0061 |
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| Symbol | rapA |
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| ID | 6144155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 65507 |
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| End bp | 68413 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641614962 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001742178 |
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| Protein GI | 170680507 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00130615 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.800173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTTA CACTTGGTCA ACGCTGGATC AGCGATACAG AAAGCGAATT GGGACTTGGA
ACCGTTGTCG CGGTGGATGC GCGAACTGTC ACTTTACTTT TCCCATCTAC TGGTGAAAAC
CGTCTGTACG CACGCAGTGA TTCCCCCGTG ACCCGCGTGA TGTTCAACCC TGGTGATACT
ATTACCAGCC ATGATGGCTG GCAGATGCAA GTCGAAGAAG TAAAAGAAGA AAATGGCTTG
CTGACCTATA TCGGTACTCG CCTGGATACT GAAGAGTCCG GCGTGGCCCT GCGTGAAGTT
TTCCTTGATA GCAAACTGGT GTTCAGCAAA CCGCAGGACC GTCTGTTTGC CGGGCAGATT
GACCGTATGG ACCGCTTTGC GCTGCGTTAT CGCGCGCGTA AGTATTCCAG CGAACAGTTC
CGTATGCCGT ACAGCGGCCT GCGCGGTCAG CGTACCAGCC TGATCCCGCA CCAGCTCAAC
ATCGCTCATG ATGTTGGTCG CCGCCACGCG CCGCGCGTCC TGTTGGCTGA CGAAGTGGGT
TTAGGGAAAA CCATTGAAGC CGGGATGATC CTGCATCAGC AACTGCTCTC TGGCGCTGCT
GAACGTGTGC TGATTATCGT CCCGGAAACC TTACAGCATC AGTGGCTGGT AGAAATGCTG
CGCCGTTTCA ACCTGCGCTT TGCTCTGTTT GATGATGAGC GTTATGCCGA AGCTCAGCAC
GATGCTTACA ACCCGTTCGA TACCGAGCAG CTGGTGATTT GCTCGCTGGA TTTTGCCCGT
CGTAGCAAAC AGCGTCTGGA ACATCTCTGT GAAGCCGAGT GGGATCTACT GGTGGTCGAT
GAAGCGCATC ACCTGGTGTG GAGCGAAGAT GCGCCGAGCC GTGAATATCA GGCCATTGAA
CAACTGGCAG AGCACGTGCC GGGCGTTCTG CTGCTGACCG CAACCCCGGA ACAGCTGGGG
ATGGAAAGCC ACTTCGCCCG TCTGCGTCTG CTGGACCCGA ACCGTTTCCA CGATTTTGCG
CAATTCGTTG AAGAGCAGAA AAATTATCGT CCGGTTGCGG ACGCCGTTGC CATGCTGCTG
GCAGGTAACA AACTGAGCAA TGATGAACTG AACATGCTCG GTGAGATGAT CGGCGAGCAG
GATATCGAGC CGCTGTTGCA AGCAGCAAAC AGCGACAGCG AAGATGCACA GAGCGCCCGT
CAGGAGCTGG TTTCGATGCT GATGGATCGC CACGGCACCA GCCGCGTGCT GTTCCGTAAC
ACGCGTAACG GTGTGAAAGG CTTCCCGAAA CGCGAGCTGC ACACCATTAA GCTGCCGCTG
CCGACACAGT ATCAGACGGC TATTAAAGTC TCCGGCATTA TGGGCGCACG CAAAAGTGCG
GAAGACCGCG CTCGCGATAT GCTCTACCCG GAGCGTATTT ATCAGGAATT TGAAGGTGAT
AACGCCACCT GGTGGAACTT CGATCCGCGC GTTGAGTGGC TGATGGGCTA CCTGACCAGC
CATCGCTCTC AGAAAGTGCT GGTGATCTGT GCCAAAGCTG CCACTGCGCT GCAACTGGAG
CAGGTACTGC GCGAACGTGA AGGTATTCGC GCCGCGGTAT TCCACGAAGG TATGTCGATT
ATTGAACGTG ACCGCGCTGC CGCCTGGTTT GCTGAAGAAG ACACCGGCGC ACAGGTACTG
CTGTGCTCGG AAATCGGTTC TGAAGGACGT AACTTCCAGT TCGCCAGCCA CATGGTGATG
TTTGACCTGC CATTCAACCC GGATCTGCTG GAGCAGCGTA TTGGTCGTCT GGATCGTATC
GGTCAGGCGC ACGATATTCA GATCCATGTG CCTTATCTGG AGAAAACCGC TCAGTCGGTG
CTGGTGCGCT GGTATCACGA AGGTCTGGAT GCATTCGAGC ACACCTGCCC GACCGGACGC
ACTATCTACG ATAGCGTATA CAACGATCTG ATTAACTATC TGGCTTCACC GGATGAGACC
GAAGGCTTTG ACGATCTGAT CAAAAACTGC CGCGAGCAAC ATGAAGCGCT GAAAGCACAG
CTGGAACAGG GCCGTGACCG CCTGCTGGAA ATCCACTCCA ACGGTGGCGA AAAAGCCCAG
GCACTGGCAG AAAGCATTGA AGAGCAGGAT GACGATACCA ACCTGATCGC CTTCGCCATG
AACCTGTTCG ATATTATCGG TATCAATCAG GACGATCGCG GCGACAACAT GATCGTACTG
ACGCCGTCCG ATCATATGCT GGTGCCGGAC TTCCCTGGCT TGTCGGAAGA TGGCATCACC
ATCACCTTTG ATCGTGAAGT GGCGCTGGCG CGTGAAGATG CGCAGTTTAT TACCTGGGAA
CATCCGCTGA TCCGCAACGG TCTGGATCTG ATCCTTTCTG GCGATACCGG TAGCAGCACG
ATTTCACTGT TGAAAAACAA AGCGTTGCCG GTAGGTACGC TGTTGGTGGA ACTGATTTAC
GTGGTCGAAG CCCAGGCTCC GAAGCAGTTG CAGCTCAACC GCTTCCTGCC ACCGACGCCG
GTACGTATGC TGCTGGATAA AAACGGCAAC AACCTGGCGG CGCAGGTGGA GTTTGAAACC
TTTAACCGTC AGCTTAACGC GGTTAACCGT CACACCGGCA GCAAACTGGT TAACGCCGTG
CAGCAGGATG TTCACGCGAT CCTTCAGCTG GGTGAAGCAC AGATCGAGAA ATCTGCCCGT
GCACTGATTG ATGCCGCACG TAACGAAGCC GACGAAAAAC TGTCTGCCGA GCTGTCTCGT
CTGGAAGCTC TGCGTGCAGT GAACCCGAAC ATTCGTGACG ACGAACTGAC CGCCATTGAG
AGCAACCGTC AGCAGGTAAT GGAAAGCCTG GATCAGGCAG GCTGGCGTCT GGATGCCCTG
CGTTTGATCG TTGTAACGCA TCAGTAA
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| Protein sequence | MPFTLGQRWI SDTESELGLG TVVAVDARTV TLLFPSTGEN RLYARSDSPV TRVMFNPGDT
ITSHDGWQMQ VEEVKEENGL LTYIGTRLDT EESGVALREV FLDSKLVFSK PQDRLFAGQI
DRMDRFALRY RARKYSSEQF RMPYSGLRGQ RTSLIPHQLN IAHDVGRRHA PRVLLADEVG
LGKTIEAGMI LHQQLLSGAA ERVLIIVPET LQHQWLVEML RRFNLRFALF DDERYAEAQH
DAYNPFDTEQ LVICSLDFAR RSKQRLEHLC EAEWDLLVVD EAHHLVWSED APSREYQAIE
QLAEHVPGVL LLTATPEQLG MESHFARLRL LDPNRFHDFA QFVEEQKNYR PVADAVAMLL
AGNKLSNDEL NMLGEMIGEQ DIEPLLQAAN SDSEDAQSAR QELVSMLMDR HGTSRVLFRN
TRNGVKGFPK RELHTIKLPL PTQYQTAIKV SGIMGARKSA EDRARDMLYP ERIYQEFEGD
NATWWNFDPR VEWLMGYLTS HRSQKVLVIC AKAATALQLE QVLREREGIR AAVFHEGMSI
IERDRAAAWF AEEDTGAQVL LCSEIGSEGR NFQFASHMVM FDLPFNPDLL EQRIGRLDRI
GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD AFEHTCPTGR TIYDSVYNDL INYLASPDET
EGFDDLIKNC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ ALAESIEEQD DDTNLIAFAM
NLFDIIGINQ DDRGDNMIVL TPSDHMLVPD FPGLSEDGIT ITFDREVALA REDAQFITWE
HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELIY VVEAQAPKQL QLNRFLPPTP
VRMLLDKNGN NLAAQVEFET FNRQLNAVNR HTGSKLVNAV QQDVHAILQL GEAQIEKSAR
ALIDAARNEA DEKLSAELSR LEALRAVNPN IRDDELTAIE SNRQQVMESL DQAGWRLDAL
RLIVVTHQ
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