| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0041 |
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| Symbol | caiT |
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| ID | 6144631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 45596 |
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| End bp | 47110 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641614942 |
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| Product | L-carnitine/gamma-butyrobetaine antiporter |
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| Protein accession | YP_001742158 |
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| Protein GI | 170680951 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.206145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATG AAAAGAGAAA AACGGGAATA GAACCGAAGG TTTTCTTTCC GCCATTAATA
ATCGTCGGCA TACTTTGTTG GCTTACAGTC AGAGATCTGG ATGCGGCGAA TGTCGTTATT
AATGCTGTAT TCAGTTACGT CACCAATGTA TGGGGATGGG CATTTGAATG GTATATGGTA
GTGATGCTTT TCGGTTGGTT CTGGCTGGTG TTTGGCCCGT ATGCCAAAAA GCGTTTAGGT
AACGAACCAC CTGAATTTAG TACCGCCAGT TGGATCTTTA TGATGTTCGC CTCCTGTACG
TCTGCTGCCG TACTGTTCTG GGGATCGATT GAGATCTACT ACTACATCTC CACCCCGCCG
TTTGGCTTAG AACCGAACTC GACAGGGGCG AAAGAGTTGG GGCTGGCTTA CAGCTTGTTC
CACTGGGGAC CTCTGCCGTG GGCCACTTAC AGCTTCCTTT CTGTCGCCTT CGCTTACTTC
TTCTTTGTCC GCAAAATGGA AGTGATTCGC CCCAGCTCCA CCCTGGTGCC GCTGGTGGGT
GAAAAACACG CCAAAGGGTT GTTCGGTACC ATCGTCGACA ACTTCTATCT CGTCGCCTTG
ATTTTCGCGA TGGGTACCAG TCTGGGCCTT GCCACGCCGC TGGTGACCGA GTGTATGCAA
TGGTTGTTTG GCATTCCGCA TACCCTGCAA CTGGACGCTA TCATCATTAC CTGCTGGATT
ATCCTCAACG CCATTTGCGT CGCCTGCGGT CTGCAAAAAG GGGTACGTAT CGCCAGTGAC
GTGCGTAGTT ACCTGAGCTT CCTGATGCTG GGTTGGGTGT TCATTGTCAG CGGTGCCAGC
TTCATCATGA ACTACTTCAC CGATTCGGTG GGGATGTTGC TGATGTATCT GCCGCGCATG
TTGTTCTATA CCGATCCCAT CGCTAAAGGC GGCTTCCCGC AGGGCTGGAC CGTGTTCTAC
TGGGCATGGT GGGTGATTTA CGCTATCCAG ATGAGTATCT TCCTCGCCCG CATCTCCCGT
GGTCGTACCG TGCGTGAACT GTGCTTCGGC ATGGTGCTGG GGCTGACAGC GTCAACCTGG
ATCCTGTGGA CTGTACTCGG TAGTAACACT CTGCTGTTGA TGGATAAAAA CATCATCAAC
ATTCCAAATC TGATCGAACA GTACGGTGTG GCGCGCGCCA TCATCGAAAC CTGGGCCGCT
CTGCCACTCA GCACCGCCAC CATGTGGGGC TTCTTCATCC TCTGCTTTAT TGCCACCGTT
ACGCTGGTTA ACGCCTGCTC TTATACCCTG GCGATGTCCA CTTGCCGCGA AGTACGCGAT
GGTGAAGAAC CACCGCTGCT GGTGCGTATC GGCTGGTCAA TTCTGGTTGG CATTATCGGT
ATTGTTCTGC TGGCGCTCGG CGGCCTGAAA CCGATTCAAA CCGCCATTAT CGCCGGAGGA
TGCCCGCTGT TCTTCGTCAA CATTATGGTG ACGCTCTCCT TTATTAAAGA CGCGAAACAG
AACTGGAAAG ATTAA
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| Protein sequence | MKNEKRKTGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV
VMLFGWFWLV FGPYAKKRLG NEPPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP
FGLEPNSTGA KELGLAYSLF HWGPLPWATY SFLSVAFAYF FFVRKMEVIR PSSTLVPLVG
EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI
ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS FIMNYFTDSV GMLLMYLPRM
LFYTDPIAKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG MVLGLTASTW
ILWTVLGSNT LLLMDKNIIN IPNLIEQYGV ARAIIETWAA LPLSTATMWG FFILCFIATV
TLVNACSYTL AMSTCREVRD GEEPPLLVRI GWSILVGIIG IVLLALGGLK PIQTAIIAGG
CPLFFVNIMV TLSFIKDAKQ NWKD
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