| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3297 |
|---|
| Symbol | |
|---|
| ID | 6972024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3029185 |
|---|
| End bp | 3030435 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643387109 |
|---|
| Product | nucleoside transporter, NupC family |
|---|
| Protein accession | YP_002271573 |
|---|
| Protein GI | 209396884 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0458092 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.103773 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTCA TGAGAAGTGT TCTGGGAATG GTGGTATTGC TGACGATTGC GTTTTTACTG
TCAGTAAACA AGAAGAAGAT CAGCCTGCGT ACCGTTGGCG CGGCGTTAGT GTTACAGGTC
GTGATTGGCG GCATTATGCT TTGGTTACCG CCAGGGCGTT GGGTCGCTGA AAAAGTCGCT
TTTGGTGTGC ATAAAGTGAT GGCGTACAGC GACGCGGGTA GCGCATTTAT CTTCGGTTCT
CTGGTCGGAC CGAAAATGGA CACCTTATTT GATGGCGCAG GATTTATCTT TGGTTTCAGG
GTATTACCGG CAATTATCTT CGTCACTGCA CTGGTGAGTA TTCTCTACTA CATCGGTGTG
ATGGGGATTT TAATTCGCAT TCTCGGCGGT ATATTCCAGA AAGCATTAAA TATCAGCAAG
ATTGAGTCAT TCGTCGCGGT CACTACCATT TTCCTCGGGC AAAACGAAAT TCCGGCGATT
GTGAAGCCCT TTATCGATCG GCTGAATCGC AATGAATTAT TTACAGCGAT TTGTAGCGGC
ATGGCCTCGA TTGCTGGTTC GACAATGATT GGTTATGCCG CACTGGGCGT GCCTGTGGAA
TATTTGCTGG CGGCATCGTT AATGGCGATC CCCGGGGGGA TCTTGTTTGC CCGCCTGCTA
AGCCCGGCTA CGGAATCTTC GCAGGTTTCT TTTAATAACC TCTCTTTCAC CGAAACACCG
CCAAAAAGCA TTATTGAAGC CGCCGCGACA GGGGCAATGA CCGGGCTGAA AATCGCCGCA
GGTGTGGCGA CAGTAGTGAT GGCATTCGTC GCCATCATTG CGTTAATTAA CGGTATTATC
GGCGGCGTTG GCGGCTGGTT TGGTTTTGAA CATGCCTCGC TGGAGTCCAT TGTAGGTTAT
CTGCTGGCCC CACTGGCGTG GGTAATGGGT GTTGACTGGA GTGATGCGAA TCTTGCCGGG
AGTTTGATTG GACAGAAACT GGCAATAAAT GAATTTGTCG CTTATCTCAA TTTCTCACCC
TATCTGCAAA CGGCTGGCAC TCTGGATGCT AAAACCGTGG CGATTATTTC CTTCGCGTTG
TGCGGTTTCG CTAACTTTGG TTCTATCGGG GTGGTGGTGG GGGCGTTTTC TGCGGTTGCG
CCACACCGTG CGCCGGAAAT CGCCCAGCTT GGTTTACGCG CGCTGGCGGC GGCGACACTT
TCTAACCTGA TGAGTGCCAC CATTGCCGGG TTCTTTATTG GTTTAGCGTA G
|
|---|
| Protein sequence | MDVMRSVLGM VVLLTIAFLL SVNKKKISLR TVGAALVLQV VIGGIMLWLP PGRWVAEKVA
FGVHKVMAYS DAGSAFIFGS LVGPKMDTLF DGAGFIFGFR VLPAIIFVTA LVSILYYIGV
MGILIRILGG IFQKALNISK IESFVAVTTI FLGQNEIPAI VKPFIDRLNR NELFTAICSG
MASIAGSTMI GYAALGVPVE YLLAASLMAI PGGILFARLL SPATESSQVS FNNLSFTETP
PKSIIEAAAT GAMTGLKIAA GVATVVMAFV AIIALINGII GGVGGWFGFE HASLESIVGY
LLAPLAWVMG VDWSDANLAG SLIGQKLAIN EFVAYLNFSP YLQTAGTLDA KTVAIISFAL
CGFANFGSIG VVVGAFSAVA PHRAPEIAQL GLRALAAATL SNLMSATIAG FFIGLA
|
|---|
| |