| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2353 |
|---|
| Symbol | slyB |
|---|
| ID | 6968282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 2225897 |
|---|
| End bp | 2226364 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643386227 |
|---|
| Product | outer membrane lipoprotein SlyB |
|---|
| Protein accession | YP_002270711 |
|---|
| Protein GI | 209396402 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3133] Outer membrane lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00612536 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAC GCGTATTGGT TGTTTCAATG GTAGGTCTGT CTCTTGTCGG TTGTGTTAAT
AACGACACCC TGTCAGGGGA TGTTTATACC GCTTCTGAAG CGAAACAAGT ACAGAATGTC
AGCTATGGAA CCATCGTTAA CGTACGTCCG GTACAGATTC AGGGCGGTGA TGATTCCAAC
GTTATCGGTG CAATTGGCGG TGCTGTTCTT GGTGGTTTCC TGGGAAATAC TGTTGGTGGC
GGAACCGGGC GTTCTCTGGC TACTGCAGCA GGCGCTGTTG CAGGTGGCGT AGCTGGTCAG
GGCGTACAGA GTGCAATGAA CAAAACGCAA GGTGTCGAGC TGGAAATTCG TAAAGACGAT
GGTAATACCA TCATGGTGGT ACAGAAACAA GGCAACACTC GTTTCTCTCC GGGCCAACGT
GTCGTACTGG CCAGCAATGG CAGTCAGGTG ACCGTTTCTC CGCGCTAA
|
|---|
| Protein sequence | MIKRVLVVSM VGLSLVGCVN NDTLSGDVYT ASEAKQVQNV SYGTIVNVRP VQIQGGDDSN
VIGAIGGAVL GGFLGNTVGG GTGRSLATAA GAVAGGVAGQ GVQSAMNKTQ GVELEIRKDD
GNTIMVVQKQ GNTRFSPGQR VVLASNGSQV TVSPR
|
|---|
| |