Gene DvMF_0085 details

Gene Information

• Locus tag: DvMF_0085
• Symbol: rpsC
• ID: 7171959
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: +
• Start bp: 104347
• End bp: 104988
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643538578
• Product: 30S ribosomal protein S3
• Protein accession: YP_002434514
• Protein GI: 218885193
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0092] Ribosomal protein S3
• TIGRFAM ID: [TIGR01009] ribosomal protein S3, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 65
• Fosmid unclonability p-value: 0.0561951
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGTCAGA AAGTACATCC TTACGGCTTC CGGTTGGGGT ACAATAAGAA CTGGCAGTCG 
CGCTGGTTCA GCAAGAAGGA ATACCCCGGC TTCGTCTTCG AGGATCACAA CATCCGCAAG 
TTCGTGAAGA AGACGCTGTA CCACGCCGGT CTTTCCAAGA TCGAGATCGA GCGTGCCGGC 
GGCAAGGTGC GGCTGATCCT CTCCACCGCG CGTCCGGGCA TTGTCATCGG CCGCAAGGGC 
GTGGAAATCG AAAAACTCCG TGGCGACCTG CGCAAGAAGT TCAAGCGCGA GTTCTCCATT 
GAGGTGAACG AAATCCGCCG CCCCGAAGTG GAAGCCCAGC TCGTTGCCGA AAACATCGCG 
CTGCAGCTTG AACGCCGTGT GGCTTTCCGT CGCGCCATGA AGCGCACGGT GTCCATGTCG 
CGCAAGTTTG GCGCCGAAGG CATCAAGGTG ACCTGTTCCG GCCGCCTCGC CGGGGCCGAA 
ATCGCCCGTA CCGAATGGTA CCGCGATGGT CGCGTGCCCC TGCAGACCCT GCGTGCCGAC 
ATCGACTTCG GTTTTGCCGA GGCCCGTACC ACCTACGGGG TGATCGGCGT CAAGGTCTGG 
ATTTTCAAGG GTGAAATTCT GGACAACGAG GTAGAACAGT AA 

 

Protein sequence

MGQKVHPYGF RLGYNKNWQS RWFSKKEYPG FVFEDHNIRK FVKKTLYHAG LSKIEIERAG 
GKVRLILSTA RPGIVIGRKG VEIEKLRGDL RKKFKREFSI EVNEIRRPEV EAQLVAENIA 
LQLERRVAFR RAMKRTVSMS RKFGAEGIKV TCSGRLAGAE IARTEWYRDG RVPLQTLRAD 
IDFGFAEART TYGVIGVKVW IFKGEILDNE VEQ