| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_3371 |
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| Symbol | |
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| ID | 7383610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 3608673 |
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| End bp | 3610127 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 643656692 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002554798 |
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| Protein GI | 222112534 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00556392 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGCC CCGTCCTCCA GCGCCTTGCG CTTTCCACCC TGCCCCTGGC ACTGGCCGCC
TGCGCCGTGC AACGCCCGCC CGCGGCCGTG CAGGCACCCG CACCCTCCGC CTGGCACGCA
CCGCTGCCCC ACCAAGGCAG CGTGGCCGAT CTGGCCGGCT GGTGGCAGCG CCACAGCGAC
CCGCTGCTGG GCGCGCTGAT CGTGGACGCA CAGGCCCTCA GTCCCACGGT GGCTGAGGCC
GGCGCCCGTC TGGCACAGGC CCGCGCGCAG CAGACGGCCG CACGCGCGGC GCTGCTGCCC
AGCCTGGACG CGCAGGCCAG CGCCAGCCGC GGCTTCAACG AGCAGGTGCG CGGCGTGGCC
ACCACCGCCC AGGCGGGGCT GCAAGCCGGC TGGGAGATCG ACCTGTTCGG CCGCAACGCC
GCCGTGGCGG ACGCCGCGCG CGAGCGCCTG GCCGGTGCGC AGGCGCAGTG GCACGAGGCC
CGCGTTTCCG TGGCGGCCGA GACGGCTCTG CAGTACAGCA ATTGGCACCA CTGCGCGCGC
CAGTTGCAGG TGGCGCAGGC CGACGCGCGC TCGCGCGGCG AGACGGCCCG CCTCACGCGC
GAGAGCGAAC GCGCGGGCTT CACCGCCCCC GCCACCGCCG CGCTGGCCAC GGCCAGCCAG
GCCGACAGCG CGGTGCGCGC CGAGCAGCAG CGCCTGCAGT GCGAGGTGAT CGTCAAGACA
CTGGTGGCCC TCACCGGGCG CGACGAGCCC CTGCTGCGCT CGCAGCTGGC TGCCGCGCCG
CCGCTGCACC CGCCCGAGCA GCTGTTCAGC ATCGACGGCC TGCCCGCGCA GACGCTGGCG
CAGCGGCCCG ACGTCTACGC CGCCGAGCGC GAGGTGGCGG CCGCCAGTGC CGAGGTGGGC
GACGCCCAGG CGCAGCGCTA CCCGCGGCTC ACGCTCAGCG GCACCATTGG CCGCGGGTTG
GTGCGCACCG CGGGGGTGCA AGCCACCAGC AACACCTGGT CCATCGGCCC GCTGGCCGTC
ACGCTGCCGC TGTTCGACGG CGGTCGCCGC GCCGCGCAGG TGGATGCCGC CCGTGCGCGC
TACGACAGCG CCGCGCAGGC CTACCGCGCG CAGGTGCGCC AAGCCGTGAG CGAGGTGGAG
CAGGCCCTGG CGCGGCTGGA CAGCACCGCG CGCCGCAGCA CCGACGCCCG GCGCGCCGCC
GAGGACTACC GCCGCTCCTT CACCGCCACG CAGGAGCGCT GGCGCGCTGG CCTGGCCAGC
CTGGTGGAAC TGGAGGATGC CCGCCGCACC GCCCTCGCCT CGGACACCGC CGTGGTCGCG
CTGGAGCAAG AGCGCATGGC CGCCTGGGTG GCGCTGTACC GCGCGGCCGG CGGCGGCTGG
ACGCCCGAGG TCGACGCGCC AGCGGCCCAG ACCTCCACGC AGGCGACCAC CACCCCCCCT
TCTTCTTCGC ACTAA
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| Protein sequence | MKRPVLQRLA LSTLPLALAA CAVQRPPAAV QAPAPSAWHA PLPHQGSVAD LAGWWQRHSD
PLLGALIVDA QALSPTVAEA GARLAQARAQ QTAARAALLP SLDAQASASR GFNEQVRGVA
TTAQAGLQAG WEIDLFGRNA AVADAARERL AGAQAQWHEA RVSVAAETAL QYSNWHHCAR
QLQVAQADAR SRGETARLTR ESERAGFTAP ATAALATASQ ADSAVRAEQQ RLQCEVIVKT
LVALTGRDEP LLRSQLAAAP PLHPPEQLFS IDGLPAQTLA QRPDVYAAER EVAAASAEVG
DAQAQRYPRL TLSGTIGRGL VRTAGVQATS NTWSIGPLAV TLPLFDGGRR AAQVDAARAR
YDSAAQAYRA QVRQAVSEVE QALARLDSTA RRSTDARRAA EDYRRSFTAT QERWRAGLAS
LVELEDARRT ALASDTAVVA LEQERMAAWV ALYRAAGGGW TPEVDAPAAQ TSTQATTTPP
SSSH
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