| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1835 |
|---|
| Symbol | |
|---|
| ID | 7382602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 1954066 |
|---|
| End bp | 1955409 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643655152 |
|---|
| Product | type I secretion outer membrane protein, TolC family |
|---|
| Protein accession | YP_002553292 |
|---|
| Protein GI | 222111028 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.211257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC TGCAACGGTT GCTCTCCGTT TCCCTGGCCG TGGGCGTCTG CGCGCTGGGC
GCCCTGCCCG CGCAGGCGCA GAGCCTGTCC ACGCTGGTGG AATGGGCGCG CAGCTATGAC
GCCCCGTGGC AGGCCGCGCA GGCACAGTTG CAGGCCGCCG ACAGCCGTGC CGAGCAGGCG
CGCGCAGGAC TGTTGCCCAG CGCCGCGCTG AATGGGGGCG TGACCTACGC CCGCACCGAC
CTGACCCGTG GCCCCCTGCC CCCGCTGGAC CTGCACGCCC CTACCCAGAC CGTGGGCGTG
GTGGCCTCGC AGCCGCTGTA CCGGCCGGCC AACCGCATCG GCTTCGAGCA GGGGCAGCGC
GGGATCGACA TTGCCCGCGC GCAGCGTGAC GGGGCCGAGC AGGACCTGCT GGTGCGCGTG
AGCCAGGCGT ATTTCGATGT GCTGGCCGCC CAGGACACCC TGACCTTCAT GCAGGCCCAA
AAGGCTGCCG TGGCCGAACA ACTGGCCGCG GCCAAGCGCA ATTTCGAGGT CGGCACCGCC
ACGGTGACCG ACGAGCGCGA GGCCCACGCG CGGCACGACC TGGTGTCGGC CCAGGAGATC
GCGGCCGAGA ACGACCTGCA CGTCAAGCGC CTGGCACTGG AGCAGACCGT GGGCCGCTCG
GGCCTGACCC CGCTGCCCCT GGCCCAGCCG GTGCAGCTGC CCGCGGTGCA GCCGGCCGAT
GTGAACAGCT GGGTGCACGT CGCGGAAGAT CAGCAACCCC AGGTGCGCCA GGCAGCCATC
GCGCTGGACG TGGCGCGCCT GGAGACCGCC AAGGCCGAGA CCGGCCACCT GCCCACGGTG
GATCTGCAGG CGGGCTACAG CGTGCAGCGC ACGCCCAACG GCACCGTCAC CATGCCGGGC
GTGCACTCCC GTGCCAACGT CGCCAGCGTG GGCGTGGCGC TCAACCTGCC GCTGTTCGCG
GGCTTCGCGG TGCAAAACCG GGTGAAGGAA ACCCTGTCGC TGGAAGACAA GGCGCGCGCC
GACTTGGACC ATGCGCGCCG CAGCGTGGCC CAGGCCACGC GCGCCGCGTT CTTCGGCGTG
CAGTCGGGCC AGAGCCAGGT GCGGGCGCTG CAGGCGGCCG AGGCGTCCAC CCAGAGCGCG
CTGGAAGCCA ACCAGCTGGG CTACGAGGTG GGCGTGCGCA TCAACATCGA CGTGCTCAAC
GCCCAGAGCC AGCTCTACCA GACCAAGCGC GACCTGGCCG TGGCACGCTA CAACGTGCTC
ATGGGCACGC TGCGCCTCAA GCAGGCCGCC GGCACCTTGT CCATGGACGA CGTGGTGGCG
GTGGACAGCC TGCTGAGTCG CTGA
|
|---|
| Protein sequence | MTSLQRLLSV SLAVGVCALG ALPAQAQSLS TLVEWARSYD APWQAAQAQL QAADSRAEQA
RAGLLPSAAL NGGVTYARTD LTRGPLPPLD LHAPTQTVGV VASQPLYRPA NRIGFEQGQR
GIDIARAQRD GAEQDLLVRV SQAYFDVLAA QDTLTFMQAQ KAAVAEQLAA AKRNFEVGTA
TVTDEREAHA RHDLVSAQEI AAENDLHVKR LALEQTVGRS GLTPLPLAQP VQLPAVQPAD
VNSWVHVAED QQPQVRQAAI ALDVARLETA KAETGHLPTV DLQAGYSVQR TPNGTVTMPG
VHSRANVASV GVALNLPLFA GFAVQNRVKE TLSLEDKARA DLDHARRSVA QATRAAFFGV
QSGQSQVRAL QAAEASTQSA LEANQLGYEV GVRINIDVLN AQSQLYQTKR DLAVARYNVL
MGTLRLKQAA GTLSMDDVVA VDSLLSR
|
|---|
| |