| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_1123 |
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| Symbol | secD |
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| ID | 8428062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum acetoxidans DSM 771 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013216 |
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| Strand | + |
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| Start bp | 1151832 |
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| End bp | 1153082 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645033458 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003190632 |
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| Protein GI | 258514410 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000301062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTGGA AAAGTATATC TAAACTGGCA GTTATAGTTT TGCTGGTTGC TGCCGTGTCG
GTAGTTTTTT TTAAGCCTAA TCTTAAGCCT GTTTACAATA AGGAAATCTC CTGGATGCCG
CTGGTCAAGA TAATTAATTT GGGTCTTGAT CTAAGAGGTG GTGTGCATGT TGTTTTACAA
GCCGAGGAGA CTCCTGGTGT ATCGTTGACG GATGACGAAA TCAAGAAGGC TATGGCTGTT
ATTAGCAACC GGGTAAACCA GTATGGTGTG GCGGAGCCGA TTATTCAGCA GCAGGGCAAA
GACCGAGTCA TTGTCGAGTT AGCCGGGATA AAGGATCCCG ATGAAGCAGT CAACAATATG
GTAAAGACTG CCTACCTGGA ATTTAAAGCT GAAAACGGTC AAACCGTACT TACTGGGCGT
GATTTAAAAG ACGCTGAAGA ATCAAAGGCT CCTGACTCCT CAGCGGCGCA AGTAAACCTG
ACTTTTACTC CCGCCGGGGC AAAAACTTTT GGAGATTTTA CAGCTAGGAA TGTCGGTAGA
AATTTGGGTA TATACTTGGA CGGCAAGCTG ATTCAAAATC CTTCCATTGA AACACCGATT
CAAAATGGAC AGGCCCGTAT TACCGGTTAT GCTACTCTGC AAGATGCTCA TAATATAGCA
ATTTTGCTTC GTTCCGGTGC TTTGCCGGTA AAAATGGATG TTATTGAAAA ACGTGCGGTA
GGCCCGATGC TGGGCGCTGA CTCTCTGGCC AAGTCTAAAA TGGCCGGAAT AGTAGGTTTT
GCTGCTATTT TAATTTTTAT GATTGGGTAT TACCGTTTGC CGGGTTTGAT TGCCGATATT
GCTCTGGTTA TTTACTCACT GATTGTATTG GCGGTTTTCG CCGGATTGCA TGTTACCATG
ACGCTTCCCG GTATAGCCGG TTTTCTGCTA TCGCTGGGTA TAGCGGTAGA TGCCAATGTT
ATTATCTTTG AGAGAATTAA AGAAGAACTG CGAAATGGCA AGACACTGCG CACAGCTATT
GATGCTGGAT TTAAAAGGGC TGTTGTCACT GTTGTGGATG CTAACGTAAC AACCCTGATT
GCCGCCGCCG TGTTGTATTA TTTTGGTACC GGCCCTATTA AGGGTTTTGC TGTGACCTTG
AGTGTCGGTA TCCTGGCCAG TATGTTTACC GCTATCAGTT TGACCAGGTA TATGCTGCAG
CTAACCGCAA GCAGTAATTT GGTAAAGAAT ACTAAAATGT ACGGGGCGTA A
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| Protein sequence | MNWKSISKLA VIVLLVAAVS VVFFKPNLKP VYNKEISWMP LVKIINLGLD LRGGVHVVLQ
AEETPGVSLT DDEIKKAMAV ISNRVNQYGV AEPIIQQQGK DRVIVELAGI KDPDEAVNNM
VKTAYLEFKA ENGQTVLTGR DLKDAEESKA PDSSAAQVNL TFTPAGAKTF GDFTARNVGR
NLGIYLDGKL IQNPSIETPI QNGQARITGY ATLQDAHNIA ILLRSGALPV KMDVIEKRAV
GPMLGADSLA KSKMAGIVGF AAILIFMIGY YRLPGLIADI ALVIYSLIVL AVFAGLHVTM
TLPGIAGFLL SLGIAVDANV IIFERIKEEL RNGKTLRTAI DAGFKRAVVT VVDANVTTLI
AAAVLYYFGT GPIKGFAVTL SVGILASMFT AISLTRYMLQ LTASSNLVKN TKMYGA
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