Gene Dshi_3524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3524 
SymbolpufM 
ID5713755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3702726 
End bp3703718 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content62% 
IMG OID641269453 
Productphotosynthetic reaction center subunit M 
Protein accessionYP_001534858 
Protein GI159046064 
COG category 
COG ID 
TIGRFAM ID[TIGR01115] photosynthetic reaction center M subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.157228 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.60913 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAGT ATCAGAACAT ATTCACACAA GTCCAAGTTC AGGGCCCGGC AGAGCTCGGC 
GTGGACAACG AGAACAACCT CACCGAGGAG CGCACGACGG GGACCGGTTT CTCCCAGCTC
ATCGGTTGGA TCGGCAACGC CCAGCTGGGC CCGATCTACC TGGGGTGGTT CGGCATCATC
AGCCTCGTGA CCGGCACGCT CTGGTTCAAT ATCGTGGGCT TCAACATGCT CAGCCAGGTC
GGCTACAGCA TTCCGGAATT CATCCGGCAG CTGTTCTGGC TGGCCCTCGA GCCGCCCTCG
CCGGAATACG GGCTGCGCAT GCCGCCGCTC GATGACGGCG GCTGGTTCAT CATCGCGAGC
TTCTTCCTGC TCGTGTCGGT GATCTCCTGG TGGTTGCGGT CCTATCAGCT GGCCGAGATG
CACAAGATGG GCAAGCACGT GGCCTGGGCC TTTGCCGCCG CCATCTGGCT CTTCCTCGTG
CTGGGTCTCT TCCGTCCCAT CCTGATGGGC TCCTGGTCCG AGGCTGTGCC TTACGGCATC
TTCCCGCACC TCGATTGGAC CACGGCCTTC TCGATCCGCT ACGGCAACCT CTACTACAAC
CCGTTCCACG CGCTTTCGAT CGTGTTCCTC TACGGTTCGG TTCTGTTGTT CGCGATGCAC
GGGGCCACGA TCCTCGCCGT GACCCGCTTC GGCGGCGACC GGGAGCTGGA GCAGATCTAT
GACCGCGGCA CCGCTTCGGA ACGTGCGGGC CTCTTCTGGC GCTGGACCAT GGGTTTCAAC
GCCACGATGG AGGGTATTCA CCGCTGGGCC TGGTGGTTCG CCGTGCTCAC GCCGATCACC
GGCGGGATAG GGATCCTGCT GACCGGCACC GTGGTGGACA ACTGGTTCCT CTGGGCCGTC
GAGCACAACT TCGCGCCCGA TTACACCCAG GACTACGGGT ATGAAGCCTA CACCACCTAC
GATGGCTTCC TTGGCCGAGA GGAGGGCAAC TGA
 
Protein sequence
MPEYQNIFTQ VQVQGPAELG VDNENNLTEE RTTGTGFSQL IGWIGNAQLG PIYLGWFGII 
SLVTGTLWFN IVGFNMLSQV GYSIPEFIRQ LFWLALEPPS PEYGLRMPPL DDGGWFIIAS
FFLLVSVISW WLRSYQLAEM HKMGKHVAWA FAAAIWLFLV LGLFRPILMG SWSEAVPYGI
FPHLDWTTAF SIRYGNLYYN PFHALSIVFL YGSVLLFAMH GATILAVTRF GGDRELEQIY
DRGTASERAG LFWRWTMGFN ATMEGIHRWA WWFAVLTPIT GGIGILLTGT VVDNWFLWAV
EHNFAPDYTQ DYGYEAYTTY DGFLGREEGN