| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1667 |
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| Symbol | nasD |
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| ID | 5713232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1733528 |
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| End bp | 1735960 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267583 |
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| Product | nitrite reductase [NAD(P)H], large subunit |
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| Protein accession | YP_001533010 |
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| Protein GI | 159044216 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0751233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.158912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAGG AACTGGTAAT CATCGGCGCA GGCATGGCGT CGGGCCGTGT CATCGAGCAT
CTCCTCAAAG AGGACCCGGA TGCATTCGAG ATCACGCTGT TCAATGCCGA ACCACGCGGC
AACTACAACC GCATCATGCT CAGCCCCGTC CTGTCCGGCG ACAAGAGCTA CGCCGACATC
ATCACGCACA CGGATGACTG GTACGAACAA AACGGCATCA CCTGCCGCTT TGGCGAGCAC
GTGGTGCGGA TCGACCGCGA GACCGGAACC GTCGTCGGAC AAAGGGGCGC CCTGCCCTAT
GACAAACTTC TGATTGCGAC GGGCTCCGCG CCGTTCATCA TTCCCGTCGA GGGCAAGGAT
TTGCCCGGCG TCATAACCTA CCGCGACCTC GACGACACCA ACGCAATGAT TGAGGCGGCA
GCCAGCGGCG GCAAGGCTGT GGTCATAGGG GGCGGCCTGC TCGGGCTCGA AGCCGCCGCG
GGCCTCAAGG AACGCGGCAT GGATGTGACC GTGCTGCACC TGATGGGGCA CCTCATGGAA
CGCCAACTGG ACGAAAGCGC GGGCTTTCTG CTGCGAAGGG ATCTGGAAAA GCGCGGCATC
AAGGTGAAAT GCCGCGCCTC CACCGCCGCG ATCCTCGGAG AGACCCGGGT CGAAGGCGTG
CTCCTGGAGG ACAACGAGGG ACTGGAAGCG GACCTCGTGG TCATGGCCGT GGGCATCCGG
CCCGAAACAA GACTTGCAAC GGATGCGGGG CTCGACGTTG CCCGTGGCAT CACTGTCGAT
GCAGAGCTCC GGACATCGGA CCCCGATATC CATGCGGTCG GCGAATGCGT CGAGTTCGAC
GGCCAGCTTT TCGGGCTCGT GGCCCCGCTC TACGACCAGG CTCGGGTGGT TGCCGACAGC
CTGCTGGGCC GCAGCGCAGC CTTCACCCCG AAGGAGCTTT CGACCAAGCT GAAGGTCACC
GGCTGCGATC TGTTCTCCGC AGGCGACTTC GCAGATGGCG CGGGCCGCGA AGACATCGTT
TTCCGCGACC CGTCACGCGG CGTCTACAAA CGCCTCGTGC TGGAGGAGAA CAGGCTGGTC
GGCGCGGTGT TCTATGGCGA CACGCGTGAC AGCAATTGGT TCTTTGGCCT GATCCAGTCC
GGTGAGGACA TCTCCGAGAT GCGCGACACG CTCATCTTCG GGCCGGCCTA CCAGGGGGGG
GCCGCGCTGG ACCCTATGGC GGCCGTTGCA GCCTTACCGC TTGATGCGGA AATCTGCGGC
TGCAACGGCG TATCCAAGGG CGACATCGTG GCCGCGATCG AAGGCGGCGC GACGGATCTG
GGCACCGTGC GTTCCTTGAC CAAAGCTTCG AGTTCCTGCG GGACCTGCAC CGGGCTGGTG
GAACAGGTGC TCGGCGTGAC CCTGGGGGAC GATTTCGTGA TCCCCGCCGC CGCGTCCATC
TGCGGCTGCA CCGACCTCAG CCACGAAGAC GTGCGCCGCA TGATCAAGAG CCGGGAGCTC
AAGTCCATGG CCGCCGTCTG GCAGGAGCTG GGCTGGAAGA CCTCCTGCGG CTGCCATGTC
TGCCGCCCGG CACTGAACTT CTACCTGCTG GCGGATTGGC CTCTGGAGTA TCGCGACGAC
CCCCAGAGCC GGTTCATCAA CGAGCGCAAG CACGCCAATA TCCAGAAGGA CGGCACCTAC
TCCGTGGTGC CGCGCATGTG GGGCGGCATG ACCACGCCGG ACGAGTTGCG CGCCATCGCC
GACGCAGCCG AAAAATACAA CGTCCCGACG GTACATGTTA CCGGCGGCCA GCGAATCGAC
CTTCTCGGCG TACGCGGCGA AGACCTGCCC GCGATCTGGG CCGATCTGAA CGCCGCCGGC
ATGGTCTCCG GCCATGCCTA TGCCAAGGGC CTGCGCACCG TGAAAACCTG CGTCGGCAAG
GATCACTGCC GCTTCGGCAC CCAAGACAGC ACAGGACTGG GCATTGCGCT TGAGAAACGC
CTTTGGGGGT CCTGGACACC GCACAAGGTC AAGCTTGCAG TCTCGGGCTG CCCGCGCAAC
TGCGCCGAGG CAACCTGCAA GGATATCGGC GTGGTCTGCG TCGACAGCGG CTACCAGATC
GGCGTCGCCG GGGCCGCGGG GATGGACGTG AAGGAGACCG AGCGCCTCGC CGATGTCGCC
ACCGAGCAAG AAGCCCTCGA CCTCATCACG GCCTTTTTCC AGCTCTACCG CGAGAACGCG
AAGTACCTCG ACCGCCCCTA CAAATGGGTG GCCAAGGTCG GGCTCGATTG GGTCAAGGAC
CAGGTCTTCG ACGCGGACAC ACGACAGGGC TTGATCGAAA GGTTCGAACT CTCCCAGTCG
ATCTACCAAA AGGACCCATG GGCCGAGGAA GCCCGAAAAT CCGGAGAGAA ATATCAGCCT
CTGGCTGACT TCAAGTTGGA GGCGGCGGAA TGA
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| Protein sequence | MKQELVIIGA GMASGRVIEH LLKEDPDAFE ITLFNAEPRG NYNRIMLSPV LSGDKSYADI
ITHTDDWYEQ NGITCRFGEH VVRIDRETGT VVGQRGALPY DKLLIATGSA PFIIPVEGKD
LPGVITYRDL DDTNAMIEAA ASGGKAVVIG GGLLGLEAAA GLKERGMDVT VLHLMGHLME
RQLDESAGFL LRRDLEKRGI KVKCRASTAA ILGETRVEGV LLEDNEGLEA DLVVMAVGIR
PETRLATDAG LDVARGITVD AELRTSDPDI HAVGECVEFD GQLFGLVAPL YDQARVVADS
LLGRSAAFTP KELSTKLKVT GCDLFSAGDF ADGAGREDIV FRDPSRGVYK RLVLEENRLV
GAVFYGDTRD SNWFFGLIQS GEDISEMRDT LIFGPAYQGG AALDPMAAVA ALPLDAEICG
CNGVSKGDIV AAIEGGATDL GTVRSLTKAS SSCGTCTGLV EQVLGVTLGD DFVIPAAASI
CGCTDLSHED VRRMIKSREL KSMAAVWQEL GWKTSCGCHV CRPALNFYLL ADWPLEYRDD
PQSRFINERK HANIQKDGTY SVVPRMWGGM TTPDELRAIA DAAEKYNVPT VHVTGGQRID
LLGVRGEDLP AIWADLNAAG MVSGHAYAKG LRTVKTCVGK DHCRFGTQDS TGLGIALEKR
LWGSWTPHKV KLAVSGCPRN CAEATCKDIG VVCVDSGYQI GVAGAAGMDV KETERLADVA
TEQEALDLIT AFFQLYRENA KYLDRPYKWV AKVGLDWVKD QVFDADTRQG LIERFELSQS
IYQKDPWAEE ARKSGEKYQP LADFKLEAAE
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