| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1019 |
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| Symbol | |
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| ID | 5710535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1053712 |
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| End bp | 1055025 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641266930 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_001532362 |
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| Protein GI | 159043568 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00413042 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.658978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATC CCAAGAAGCT CTACATCAAG ACCTATGGCT GTCAGATGAA TGTCTACGAC
AGCGAGCGCA TGGCCGAGGC CATGGGCGGC GAGGGCTATG TGCAGACGGA TCGCGCCGAA
GACGCGGACA TGATCCTGCT CAACACCTGC CATATTCGCG AAAAGGCCGC CGAGAAGGTC
TATTCCGAAC TGGGCCGGTT CAAGCCGCTG AAGGCCGAAA AGCCCGACCT GAAGATCGGC
GTCGCGGGCT GCGTCGCCCA GGCCGAGGGG GCCGAGATCA TGCGCCGCCA GCCGCTGGTG
GACCTGGTGG TGGGCCCCCA GGCCTATCAC CGCCTGCCGG AGTTGACCGC GCGCGCCGCC
ACCGGGGCCA AGGCGCTGGA TACGGACTTC CCCGAAGAGG ACAAGTTCGA CCACCTCGCC
GCCCGGCCCA AGGCGAAACG CGGGCCGACC GCGTTTCTGA CCGTACAGGA AGGCTGCGAC
AAGTTCTGCG CCTTCTGCGT CGTGCCCTAT ACCCGCGGGG CCGAGGTCAG CCGCCCGGCC
GCCCGCGTAC TGACCGAGGC GCGCGATCTG GTGGAACGCG GCGTGCGCGA GATCACCCTG
CTGGGCCAGA ACGTCAACGC CTATCACGGC CACGCGCGCG GGCTTGCCGG GCTGATCTGG
GACCTGGCGG AGATCGACGG GCTCGAACGC ATCCGGTTCA CCACCTCGCA CCCCAACGAC
ATGGACGACG CGCTGATCGC CGCCCATGGG GCGTGTGACA AGCTCATGCC CTACCTGCAC
CTGCCGGTGC AGTCCGGCTC CGACCGGATC CTCAAGGCGA TGAACCGCAA GCATACCGCC
GAAAGCTACA TCCGCCTGAT CGAGCGGATC CGCGCGGCAC GCCCCGACAT CCTGCTGTCG
GGGGATTTCA TCGTGGGCTT TCCCGGCGAG ACCGATCAGG ACTTCGCCGA CACCATGGCG
CTGGTCGAGG CCGTGGGCTA CGGTCAGGCC TATTCGTTCA AATACTCCGC CCGCCCGGGC
ACGCCCGCGG CCGAGAAAGA GGACGTGCCG GGCGAAGTGG CCGATGCCCG CCTGCAAACC
CTGCAAGCCC TGCTGACGCG TCAGCAGCGC GCGATCCAGG ACGCCAAGGT CGGCACCACC
GCCCGCGTGC TTTTCGAGAA ACCCGGTCGC TTGCCGGGCC AGATGGTGGG CAAGTCCGAA
CACCTGCACG CGGTCCATGT GGCCGCCCCC GACGCCGCGC GCGGCGACCT GGTGCGCGTC
CGGATCGCGG AAAGCTCTGC CAATTCCCTG CGCGGCGTGC TGATCGCGGC CTGA
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| Protein sequence | MADPKKLYIK TYGCQMNVYD SERMAEAMGG EGYVQTDRAE DADMILLNTC HIREKAAEKV
YSELGRFKPL KAEKPDLKIG VAGCVAQAEG AEIMRRQPLV DLVVGPQAYH RLPELTARAA
TGAKALDTDF PEEDKFDHLA ARPKAKRGPT AFLTVQEGCD KFCAFCVVPY TRGAEVSRPA
ARVLTEARDL VERGVREITL LGQNVNAYHG HARGLAGLIW DLAEIDGLER IRFTTSHPND
MDDALIAAHG ACDKLMPYLH LPVQSGSDRI LKAMNRKHTA ESYIRLIERI RAARPDILLS
GDFIVGFPGE TDQDFADTMA LVEAVGYGQA YSFKYSARPG TPAAEKEDVP GEVADARLQT
LQALLTRQQR AIQDAKVGTT ARVLFEKPGR LPGQMVGKSE HLHAVHVAAP DAARGDLVRV
RIAESSANSL RGVLIAA
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