| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1852 |
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| Symbol | |
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| ID | 8419693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2123525 |
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| End bp | 2124451 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645038436 |
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| Product | Substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_003198714 |
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| Protein GI | 258405972 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000000194668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA CGTTTCTTCT CATTTCCCTG TTGTGCCTTA CCCTTCTCTT TCCCGCCGCC
GCTTTCGCGC AAAAAGACAC CATCCGTCTC GGCGTACCCC CCTGGCCTGG GGTCACTGTC
AAAACCGAAG TCGCCACCCA AATCCTTGAA GCCATGGGGT ATGAAACCCA ACAGTTGGAA
ATCGGCCCGC CCATTATCTA CAAAGGGCTG ACCACCGGCG AAATCGACGC CTACCTGGCC
GCTTGGCTGC CGCAGCAAAC GGACATGTTC GAGCCGCTCA AGGAAAAAGG CGCTATCGAT
GTCATCAATA TCAATCTTGA CGACGCCATG ACCGGTTTTG CCGTTCCGAC CTATGTCTGG
GAAGCCGGTA TCCACTCCGT TGCCGATCTG GCCCCCAACG CCGACAAATT CGACTCCACG
TTGCACACCA TCGAAGTCGG CAGCGGCATG CACACCACGA CAGAGGAAAT GGTGAAAAAC
GATGTGGCCA GCCTTGGCGA CTGGGAACTC GCCAGCAGCA CCACCCCGGC CATGCTCACC
GAAGTGAATG AAAAGACCAA GAGCAAGGAA TGGGTTGTTT TCCACGCCTG GAAACCGCAT
TGGATGACTA TCAAGATCGA TATGAAATTT CTTGAGGGCG TCCCTGGTTC CGAGGATCTC
ATCAGTGAGA GTGTCGTCTA CAACGTGGCC AGCCCAGACT TTCAAGAGCG TTTCCCCCAA
GCTCGCAAGT TCTTGGAAAA GTTCTACGTT TCTGGAGACA CCCAGAGTGC CTGGATCCAC
TCTTTCAGCT ATGAGAAAAA AGATCCTGAA GATGTCGCCC GCGAGTGGAT CGCCAATAAT
ATGGAAACAG TGAGCCAATG GCTGGACGGG GTAGAAACCA CCGACGGCCG GCCGGCCATC
GACGCAGTCA AGAACGCCGT CAAATAA
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| Protein sequence | MKKTFLLISL LCLTLLFPAA AFAQKDTIRL GVPPWPGVTV KTEVATQILE AMGYETQQLE
IGPPIIYKGL TTGEIDAYLA AWLPQQTDMF EPLKEKGAID VININLDDAM TGFAVPTYVW
EAGIHSVADL APNADKFDST LHTIEVGSGM HTTTEEMVKN DVASLGDWEL ASSTTPAMLT
EVNEKTKSKE WVVFHAWKPH WMTIKIDMKF LEGVPGSEDL ISESVVYNVA SPDFQERFPQ
ARKFLEKFYV SGDTQSAWIH SFSYEKKDPE DVAREWIANN METVSQWLDG VETTDGRPAI
DAVKNAVK
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