| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1161 |
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| Symbol | |
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| ID | 8418989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1365926 |
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| End bp | 1367335 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645037736 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003198027 |
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| Protein GI | 258405285 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTTCA ACAATACCAA CAAAAAGTCA GCTGCCAAAG TAATTGATGC TGAGCCGGAT
CCTCAGCTTC ACCATTCTCA TCCTACCCCC GATTCACCCG AATCCCGGCA ACGTAAACGG
GAGCTCTCGG ATGAGTACTT CCTGCTCAAA AACAGGATCC ATACCCGTTT GTTGGACATG
GTAGACCTGT CCATGATCGA CTCTTTGGAA CCCGAGGTCC TGAAAACCCA AATCAGGAGC
CTGGTAACCA AAATCCTGGA TACTGAGGAG CGAAACGCTC CCCTGAATAT GTCTGAAAGA
GAGCGGCTGT TCAGTGACAT TGAGGACGAA GTCATGGGCT TGGGACCGCT GGAGCCCTTT
CTCAAAGACG ATACGGTGGC CGATATTCTG GTCAATACCC ACAATCAGAT ATATGTGGAA
CGTTTTGGCA AGCTTGAACT CTCCGAGTCC ACTTTCAAGG ACGACGCCCA TTTGATGCGC
ATTATCGACA AGATTGTCTC CTCTGTGGGC CGGCGCATCG ACGAATCTTC GCCTATGGTT
GACGCCCGCT TAGCCGATGG CTCCCGGGTG AACGTGATTA TCCCTCCCCT GGCTTTGGAC
GGCCCTGTGA TGTCCATCCG CAGATTTGGC AAAGACCCCT TGAAGATGGA CGATCTGATC
ATGCTCCGTG CCTTTACCCA GGGCATTGGG GAAATCATGA AGGGTATCGT CCGCTCCGAG
CTGAATGTTG TCATTTCTGG GGGAACGGGC AGCGGGAAAA CCACCCTTTT GAATTGCCTC
TCCCAATTCA TTCCGGCCAC TGACCGGATT ATCACTATCG AAGACGCAGC CGAGCTGCAG
CTCAAGCAGG AGCACGTGGT CCGGCTGGAG ACACGTCCGC CGAATATTGA AGGCAAAGGC
GAAGTTACGG CCAGGGAACT GGTCCGTAAC AGCTTACGCA TGCGCCCGGA CCGGATCATT
GTGGGTGAGG TCCGTGGCTC TGAGTCCTTT GACATGCTCC AGGCTATGAA CACCGGGCAC
GACGGTTCTC TGACCACTAT CCACGCCAAC ACCCCCAGGG ACGCTTTGAT GCGCATCGAG
AGCATGGTCT CCATGGCCAA CCTGGACATC CCTATCGAAT TCATGCGCAG ATTCATCGCT
TCAGCTATCC ACATTATCAT CCAGGTATCG AGGTACTCGG ATGGCACGCG GAAGGTGAAC
AGCATCCAGG AAATCACCGG AATGGAAGGC AACGTGATCA CAACCCAGGA AATCTTCTCC
TTCAATCCCA CGGGAGTGGA CGAAAACGGC AAGGTCAAGG GGTACTTCCG GTTCAACGGC
GTCAGACCCC AGTTTGTGGA CAAGTTCCAT CAGGTGGGTA TTGAAGTGGA TCGAGAGATA
TTCAATCCGG ATAAGATTGT TGAGGTCTGA
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| Protein sequence | MFFNNTNKKS AAKVIDAEPD PQLHHSHPTP DSPESRQRKR ELSDEYFLLK NRIHTRLLDM
VDLSMIDSLE PEVLKTQIRS LVTKILDTEE RNAPLNMSER ERLFSDIEDE VMGLGPLEPF
LKDDTVADIL VNTHNQIYVE RFGKLELSES TFKDDAHLMR IIDKIVSSVG RRIDESSPMV
DARLADGSRV NVIIPPLALD GPVMSIRRFG KDPLKMDDLI MLRAFTQGIG EIMKGIVRSE
LNVVISGGTG SGKTTLLNCL SQFIPATDRI ITIEDAAELQ LKQEHVVRLE TRPPNIEGKG
EVTARELVRN SLRMRPDRII VGEVRGSESF DMLQAMNTGH DGSLTTIHAN TPRDALMRIE
SMVSMANLDI PIEFMRRFIA SAIHIIIQVS RYSDGTRKVN SIQEITGMEG NVITTQEIFS
FNPTGVDENG KVKGYFRFNG VRPQFVDKFH QVGIEVDREI FNPDKIVEV
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