Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0858 |
Symbol | |
ID | 8418677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1015966 |
End bp | 1017018 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 645037427 |
Product | putative RNA polymerase, sigma 70 family subunit |
Protein accession | YP_003197727 |
Protein GI | 258404985 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000347952 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.310936 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATA CTGAAAATAA AGACATCAAT TCTATGGAAC ACGAGCACGA TCACGATATC GAACTCGATG AGCCCGAAGC CGGTGAGACC CTTGATGATT CCACCGCTGA AGAGGCGTCG GCCGAATCCC TTCCGGCACC TGCCGCGGTG ACAGAACACC TGCCGTCGCT CATCCAGCCG TCGAGCAACG ATGTCGCCAT TCAGGATCCG CTCAAACTTT ACTTGCGCGA GGTCAATCGC TTTCCGTTGC TGGAGCCGGA CGAGGAAGTG GAATTGGCCC GGCGGGTCCG TGATGAAAAC GATCAGTCTG CAGCCTTCCG CCTGATCAGT TCCCACCTGC GTTTGGTGGT CAAGATCGCC ATGGAGTTCC AACGGCGGTG GATGAAAAAT GTCCTTGATC TGGTCCAGGA GGGCAATGTG GGGCTGATGA AGGCGGTCCA AAAATTCGAC CCCGAGCGGG GTATTAAATT TTCCTACTAC GCCTCGTTCT GGATCCGGGC CTATATCCTG AAGTTCATTA TGGACAACTG GCGTATGGTC AAATTGGGAA CCACCCAGGC CCAGCGCAAA CTGTTCTACA ATTTGAGCCG AGAAAAACAG CGGTTGCAGG CCCAGGGTTT CGACCCCGAC GCCAGTACTC TCTCAGAGAA TCTGGATGTC AGTGAAGAAA GTGTCGTGGA AATGACCCAG CGCCTCGGCG GACATGATCT TTCCCTGGAC GCCCCCCTGG GCGAAGACTC CTCGAGTTCG CGCATGGATT TCCTTCCAGC CTTGGGGGCA GGCATCGAGG AGTCGCTGGC CCAGCAGGAA ATGGGCTCTG CCCTGCGTCA GCATCTGCAG ACGATTCTGC CGAAACTCAA CGACAAGGAA AAGGAAATCC TGGAACACCG ATTGCTGACT GACAGCCCGG TTACCCTGCG GGAAATCGGG GAAAAATACG GAATCACCCG CGAACGCGTC AGACAAATCG AGTCCAGACT CCTGCAAAAA CTCAAAACCC ATCTCTCCTC AGAAATCCAA GACTTTTCCG AAGACTGGAT CGAGCATGAA TAA
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Protein sequence | MKHTENKDIN SMEHEHDHDI ELDEPEAGET LDDSTAEEAS AESLPAPAAV TEHLPSLIQP SSNDVAIQDP LKLYLREVNR FPLLEPDEEV ELARRVRDEN DQSAAFRLIS SHLRLVVKIA MEFQRRWMKN VLDLVQEGNV GLMKAVQKFD PERGIKFSYY ASFWIRAYIL KFIMDNWRMV KLGTTQAQRK LFYNLSREKQ RLQAQGFDPD ASTLSENLDV SEESVVEMTQ RLGGHDLSLD APLGEDSSSS RMDFLPALGA GIEESLAQQE MGSALRQHLQ TILPKLNDKE KEILEHRLLT DSPVTLREIG EKYGITRERV RQIESRLLQK LKTHLSSEIQ DFSEDWIEHE
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