| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0014 |
|---|
| Symbol | aspS |
|---|
| ID | 8417816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 15251 |
|---|
| End bp | 17059 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645036577 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_003196894 |
|---|
| Protein GI | 258404152 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGC GTAAAGGGAA AGATCTCCTG CAATCGGTCG GCGGATGGAA ACGGACACAC
CATCTCGCCG CACTCACGAG CGAAAACCTG GGGCAGGAGG TCTGCCTCAT GGGCTGGGTC
CAGTTTCGCC GGGACCACGG CGGGCTTATC TTCATCGATC TGCGGGACCG CCGGGGGCTG
ACGCAGATCG TCTTCTCCCC GGAGATAAAC GAGCAAGCCC ATGCCGAGGC CCATGTGCTG
CGTCCGGAAT ATGTCCTGGC TGTCAAAGGG ACGGTCCGTG AACGCCCTGA GGGGATGGTC
AATCCTCGTC TGGCCACTGG CGAGATCGAA GTCGTGGTCA CTGAATGGAA GCTACTCAAT
GTGGCGCAGA CCCCTCCCTT TGTCCTCGAA GAGCGGGCCG AGGTCTCAGA AAATGTCCGT
TTGGCCCACC GCTATCTGGA TATGCGCCGC CCTGGCCTTG GCAGCAATCT GGTGGTGCGC
CACAAGGCCA CGCAGGCGAT TCGCAATTAC CTTGACCAAT TGGATTTTCT TGAAATCGAA
ACTCCGGTAT TGACCAAGTC GACCCCGGAA GGCGCCCGGG ATTTCCTGGT CCCCAGCCGG
CTGAACCAAG GGGAATTCTA CGCCCTGCCC CAGAGCCCCC AATTGTTCAA ACAGTTGCTC
ATGTACGGCG GCATGGATCG GTATTACCAG ATCGTGCGCT GTTTTCGTGA CGAGGACCTT
CGAGCCGACC GGCAACCGGA ATTTACCCAG ATCGATATGG AGATGTCCTT CGCCGAAGAG
GAGGATGTCA TGGGAGTGGC CGAAGGATTG GTGGCTGAGG TCTTTGCCAA GACATTGGGC
GTGGACTTGC CGAACCCTGT GCCGCGAATG ACCTATGCTG AAGCGGTGGA CAAATACGGC
CTGGACCGCC CTGACACCCG TTTCGAACTC TTGCTCGAGG AGGTCACCGA GCTGGTGCGC
GGCTCGGAGT TCAAGCTCTT TGCCCAGGCG GAGATGGTCA AAGCCCTGCG CGTTCCCCAG
GGCAGCGAGC TGACCCGCAA GGAAATCGAC GACCTGACCG AGTTTGTGAA AATTTACGGC
GCCAAAGGTC TGGCCTGGAT CAAGATCAAG GATGACGGCT GGCAGTCGCC CATCGCCAAA
TTCCTCAGCG ACGCGGAGTG CACGGCCTTG ACCGACCATC TTGGCCTGCA AAGCGGAGAT
ATCGTCTTTT TCCAGGCTGG CGGGGCCGAT ATGGTCAATA CCGCTTTGGG GCAGCTGCGG
TTGCGACTGG GAGAGCGTTT CGATCTCGTT CCCGCTGACC GTTTTGATCT GGTCTGGATC
ACGGATTTTC CGCTCATGGA GTGGGATGAT GAGGCCCAGC GCTGGGTGGC CCGGCACCAC
CCTTTCACCG CCACCCGCGA AGAGGATATC GCGGCCATGC TTGAGGACCC CGGGGCTGTG
ATCGCCCGCT CTTACGATCT GGTCCTCAAC GGCAACGAGA TCGGTGGTGG CTCGGTGCGT
ATCCATCGCA GCGAAGACCA GTGGCGGATG TTCGACGCCC TGGGCATTGA CCGGGCCGAG
GCCGAGGAAA AATTCGGCTT TTTGCTCCGC GCCCTGGAAT ACGGTGCCCC TCCCCACGCG
GGTATTGCCT TTGGACTTGA TCGTCTTATT ATGATTTTGT GCGGTGCCGA ATCGATCCGA
GATGTCATCG CGTTTCCGAA AACCCAGAAG GCGACCTGTC TGTTGACCGA TGCTCCTTCC
GCAGTGGCCA GCACGCAATT GCGTGAACTC GGCCTGCGGT TGCGGGAGAA AAAGAAATCA
GAAGCGTAG
|
|---|
| Protein sequence | MEERKGKDLL QSVGGWKRTH HLAALTSENL GQEVCLMGWV QFRRDHGGLI FIDLRDRRGL
TQIVFSPEIN EQAHAEAHVL RPEYVLAVKG TVRERPEGMV NPRLATGEIE VVVTEWKLLN
VAQTPPFVLE ERAEVSENVR LAHRYLDMRR PGLGSNLVVR HKATQAIRNY LDQLDFLEIE
TPVLTKSTPE GARDFLVPSR LNQGEFYALP QSPQLFKQLL MYGGMDRYYQ IVRCFRDEDL
RADRQPEFTQ IDMEMSFAEE EDVMGVAEGL VAEVFAKTLG VDLPNPVPRM TYAEAVDKYG
LDRPDTRFEL LLEEVTELVR GSEFKLFAQA EMVKALRVPQ GSELTRKEID DLTEFVKIYG
AKGLAWIKIK DDGWQSPIAK FLSDAECTAL TDHLGLQSGD IVFFQAGGAD MVNTALGQLR
LRLGERFDLV PADRFDLVWI TDFPLMEWDD EAQRWVARHH PFTATREEDI AAMLEDPGAV
IARSYDLVLN GNEIGGGSVR IHRSEDQWRM FDALGIDRAE AEEKFGFLLR ALEYGAPPHA
GIAFGLDRLI MILCGAESIR DVIAFPKTQK ATCLLTDAPS AVASTQLREL GLRLREKKKS
EA
|
|---|
| |