| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3062 |
|---|
| Symbol | |
|---|
| ID | 4956727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 3323384 |
|---|
| End bp | 3324514 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640182250 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001114389 |
|---|
| Protein GI | 134300893 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.191967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGAT CCCTCATGCG GCGTGAGTTA ATTTATCTTT GGCGGGACCG GGGTCTGCGC
AATATTTTAC TCTTTAGTTC TTTGCTGGGA CTAATTCTGT TCTTTGCCCT TTACAGTGCC
CAGGTTTTGC TGGATATCCC CACCGCAGTG GTGGATCTGG ATCATTCCAG TGAAAGCCGA
CAACTGATTG AAAAAGTGAA TCAGTCAGAA AATTTACAGG TGGTGGCCTA CCTAGACAGT
TACCAAGAAG CTGAGGAACT GATCAAAGGG GGGGACATCG TGGTAACCAT GGTGATCCCG
GAGAACTATG GCAAAGCCCT TACCCTGGGG CGTCAAAGCA ATGTGTTTTT GGCCATTGAC
GGCAGTAACA TGATCTACTC CACCAATGCC ACCACCGCAG CCATGATGGT AGCTGGTACC
GTCAGTGCCC AGGCCGGGGT GAAGGCCCTG ATGGCCCGGG GGTTTCAGCC GGACGAGGCC
AAAAACGCCT ACCTGGGGGT CGAACTGCGG GAAGAGGCCT GGTTTAACCC AACTTTAAAC
TATGCCTACT TTCTTGTGTT GGCCTTGATT CTCAATATCT GGCAGCAGTG CTGTACCATA
GCCGCAGCCA TGAATATCAT TGGTGAAACG GGCCGCCCCA GTTGGCAGCA GTTCAAAATG
GCTGGTTTGT CCAAATGGAC ATTATTTGCC AGTAAATCCG TGGTGCACAT TGCCACCTTT
ATGCTGATGG TATTGCCCGT GTACCTGATT GCCTTTGGGT TCTTTAAGGT ACCGCTCCAC
TGCAACTTGT GGCTGTTTTT GCTCTTTACT CTGGTATTTA CCATTGCCAT GCATAGTGTG
GGGACCCTTG CCTCCAGTTT TGCCCGCAAT GCTGTGGATG CCACCCGGTA TGGCATGATT
ATTGCCCTGC CATCCTTTAT TCTTTCTGGT TATGGTTGGC CCCTGGAAGC CATGCCTTCC
TTTATCCAGT ACATGGCCAA ACTGCTGCCC CAAACCTGGT TTTTCCAGGG ACTGAACTAT
TTGACCTTCA AAAACCCGGA CTGGTCCTTT GTGCAAACGT ATTTTCTGAT TTTGGGTGTA
ATCGCTGTGG TTTGTTACGG TGCCGCCGCA CTGGTGACAG CCCGCAAGTA A
|
|---|
| Protein sequence | MIRSLMRREL IYLWRDRGLR NILLFSSLLG LILFFALYSA QVLLDIPTAV VDLDHSSESR
QLIEKVNQSE NLQVVAYLDS YQEAEELIKG GDIVVTMVIP ENYGKALTLG RQSNVFLAID
GSNMIYSTNA TTAAMMVAGT VSAQAGVKAL MARGFQPDEA KNAYLGVELR EEAWFNPTLN
YAYFLVLALI LNIWQQCCTI AAAMNIIGET GRPSWQQFKM AGLSKWTLFA SKSVVHIATF
MLMVLPVYLI AFGFFKVPLH CNLWLFLLFT LVFTIAMHSV GTLASSFARN AVDATRYGMI
IALPSFILSG YGWPLEAMPS FIQYMAKLLP QTWFFQGLNY LTFKNPDWSF VQTYFLILGV
IAVVCYGAAA LVTARK
|
|---|
| |