| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1669 |
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| Symbol | secD |
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| ID | 4958044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1824592 |
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| End bp | 1825833 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640180845 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001113022 |
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| Protein GI | 134299526 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000293049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATGGG ACAGGGTACT CAGACTGTTT GCAGTAGTCA TTGCTGTAGT CGTCATTGCT
GTTTTTAGTG TGCAGCCCAT CTTCCCGAAT GTAAAATGGC TACCGCTGAC AAAAGAAATA
CCTTTAGGTC TCGATCTGCA AGGGGGCGTT CATGTAGCAT TGGAGGCCCA TGATACAGAA
CAGGCAAAAG TAAACGATGA GAATATGAAG CAACTGCTGG AAGCCATTGA ACGCCGTGTC
AATGCCTTTG GTGTTTCGGA ACCCATTGTT CAGCAAGAGG GAGACCGGCG TATTATTGTA
GAATTAGCTG GTATTAAAGA CCCGGATCAA GCTGTTCGAG ATATTGTAAA GACTGCATTT
CTTGAATTCA AGACCGAGGA TGGCAAGACA ATTCTTACAG GGGCAGATTT AAAGAATGCT
GTGGAATCCA GCGATCCTGT TACCAATGTG GTGGAAGTAG GCTTGGAGTT TAACAAAGAG
GGAACCCAAA AGTTCGCCGA GGCCACCAGT GCAAATGTGG GTAAACGTAT TGCCATTATT
TTGGATGGCA ATGTATTACA AACTCCCGTT GTGAACGAAC CCATTACCGG TGGAAAGGCT
AGAATTACAG GCTATGCAAA TCTAGAAGAA GCCCATACCA TTGCTGTACT TCTTAAATCT
GGTGCGTTGC CCTTAAAGAC AGAGGTAATC GAAAAAAGAA CTGTGGGTCC AAGCCTAGGG
GCTGATTCCT TAAGCAAATC TATTAAGGCA GCAGCCGTTG GCTTAATTGC AATTTTGATT
TTTATGTTGG GCTATTATCG TTTGCCCGGC ATGGTGGCCA ACTTTGCATT GGTGGTCTAT
GGGGTAATTG TAATAGCAAT TTTTGCAGCC ATGCATGTGG TTTTAACGTT ACCTGGTATT
GCAGCCTTTG TACTCTCCAT GGGTATGGCA GTGGATGCTA ATGTTATCAT TTTTGAACGT
ATAAAAGAAG AACTCAAGAG TGGTAAAAGT TTGCGTTCTT CCATTGAATC AGGCTTTAAG
AGAGCCTTTG TGGCAGTTCT TGACTCAAAC GTCACAACCC TAATTGCTGC GGCAGTTCTT
TTCTACTTTG GATCTGGTCC CATTAAGAGT TTTGCTGTGG CCCTTTCGGT GGGTATTCTA
ACTAGTATGT TTACAGCCAT TACCTTTACC CGGTGGGTGC TGCATTTAAC GGCAAGCACT
GGCATTAAAA ATACCAAATT ATACGGTGCG CAGGGGAGGT AG
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| Protein sequence | MKWDRVLRLF AVVIAVVVIA VFSVQPIFPN VKWLPLTKEI PLGLDLQGGV HVALEAHDTE
QAKVNDENMK QLLEAIERRV NAFGVSEPIV QQEGDRRIIV ELAGIKDPDQ AVRDIVKTAF
LEFKTEDGKT ILTGADLKNA VESSDPVTNV VEVGLEFNKE GTQKFAEATS ANVGKRIAII
LDGNVLQTPV VNEPITGGKA RITGYANLEE AHTIAVLLKS GALPLKTEVI EKRTVGPSLG
ADSLSKSIKA AAVGLIAILI FMLGYYRLPG MVANFALVVY GVIVIAIFAA MHVVLTLPGI
AAFVLSMGMA VDANVIIFER IKEELKSGKS LRSSIESGFK RAFVAVLDSN VTTLIAAAVL
FYFGSGPIKS FAVALSVGIL TSMFTAITFT RWVLHLTAST GIKNTKLYGA QGR
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