| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0981 |
|---|
| Symbol | |
|---|
| ID | 5693816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1145416 |
|---|
| End bp | 1150791 |
|---|
| Gene Length | 5376 bp |
|---|
| Protein Length | 1791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641263578 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001528868 |
|---|
| Protein GI | 158520998 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATCA AAAAATTTTT TGACCGCCTC CTTTCCCCAC CGCCCGACAC GGCCAGAATA
CAGGAACTCC TGCGCACCGA AGAGCACTAC CACCTGCTGG CAAACCATAT CCATGAAGTG
ATCTTCACCA TGGATATGGA CTTCAAATAT ACCTACATCA GCCCTTCGGT TGAACATCAG
CGGGGGTTTA CCGTTGAAGA GGCGATACAC CTTCCCTTTG ATAAAAATGT CACACCGGCA
TCGGTGGAAA AAATTATCGA TCTGGTGACC AGGGGCATTT CGGCAAACCG GGAAGGACGA
GGCCCCACCC CGCCCCAGAC CATCACCATT GAGGTTTATT GCAAGGACGG CTCCACCCGC
TGGTCCGAAC TGACCGGGGA TTTTCTGTAT GACAAAAACG GCAACCCCAC GGGACTCATC
GGGGTCAGCC GGTACGTGGA TGACCGGGAG GAGGTCAGGG AGGAGCTGAT CCGTTTCAAA
CAGGCCATTG ACGGCACATC CGAGGCCATT GGTTTTTCAA CACCCTCCCG CCACCACGTC
TACCATAACA AGGCCTTTGC CCGGCTGTTC GGCTACGATA CCCCGGAAGA CCTGGAAACC
GCGGGTGGCC CTGTCACCCG GTTCAAGGAC CCCCGGACGG CCGAAGACCT TTTTTCCACC
ATCGTATCCG GCCGGCCCTG GTCCGGAGAA GTGGTGATGA TCGACAGAAA CGGCAGGGAG
TTTATCGCTC TGCACAGGGC CGACGCCATT CGGGACCGAA ACGGCGAAAT CACACTCCTC
ATGGGATCGA TCATCGACAT ATCGGCCTTA AAAAAAAGGG ATACCGAATT CCGGCAGCAG
GAGTCGCTCT ATCGCCTTCT GGCGGAAAAT ACGTCGGAGA TCGTATCCAT CATTGACCTG
AAGGATCTGT CCCATCGTTA CCTGTCGCCA TCGGTTGAAA AGATTCGAGG ATTTACCCTG
GAGGAGGCCA TGGGCCACTC CCTGGACCAG GTGCTGGCCC CGGCATCCCA TGAACTGGCC
ATAACCGCCA TTACCGAAGA GCTGGCCAGG GACGGTCAGC CCGGCGTGGA TCCGGACCGG
CACCGGGTCC TGGAACTGGA GCAGCTCCGC AAGGACGGCT CCACCGTCTG GACCGAGCTG
GTGGCATCCT TTTTGCGGGA CACAGAAGGC AAGCCAACGT CCATTCTCAC GGCGGCACGG
GACATCACGG AACGTAAAAA AGCGGAAGCA GCCATTCGGG AGAGTGAGAC CCGCTATCGC
ATGGTGGCGG AAAACATCGG TGAAGTGATC TATATCTTTG ACCTGAACGC CCTGCGATAC
ACCTATGCCA GCCCGTCGGT GCGCCACACT TACGGATACA CAGTCGAAGA GTCTCTTTCC
CTGCCCATTG ACAAGGTCTT TACCCCCGAT TCCATCAACC GGATCCTGGA AACCATCGAA
AAAGAACTGG CCCTGGAGGG CAAGCCGGGT GTGGACCCGG ACCGGCATGT CACACTGGAA
CTGGAGCAGT ACCATAAAAA CGGATCGGTT CTCTGGATCG AGACCACGGT GAAGGGACTG
CGCGACGAGA CCGGCCGTCT GGTGTCGGTG GTGGGTGTCT CCCGGGACAT CACGGAACGC
AAAAAAGCGG AGGCCGCCAT TCGCCAAAGT GAGGCCCGGT ATCGGCTCCT GGCGGAAAAC
ATCAGCGAAA TCATTTATAT TTTTGACATC ACCCGGCTGC AATACGCTTA TGTCAGCCCC
TCGGTTTCGA CCGTTTGCGG ATATACGCCG GAAGAACTGC TGACAATCCC GCTGGACACT
CTGGTCACCC CCTCCTCCTT TGACCGCGTC GTTGAAAGAC TCACTGAAGA GCTCCAGAAA
AATGGTAAGT CCGGGGTGGA CCCGGACCGG GCCGTCACCC TTGAATTGGA AGTTTACCAT
AAAGACGGCT CTCTTTTATG GATGGAGACC ACGGTAAAAG CGGTACGGGA TGAGACGGGT
CATCCCGGAC TGGTGGCCGG CGTGGCCAGA AACATCACCG AGCGCAAGAC GGCCGAAGCC
GCCATTCGGG AGCGGGAAAA GCTCTACCGG CTTCTGGCCG ACAACATCAC CGAGATGATC
TCCATCATCG ACATCGAAAC ACAGAAGCAC CTCTATATCT CTCCCTCGGT GGAACATGTC
CGGGGCTTTA CCGTGGAAGA GGTGCTGGTC CAGCCCTTTG ATCGGATTTT CACCTCTGAA
TCCTACCGGT TGGCCATGGC CACCCTGGCC GAAGAGATTG AGAAAGATGG CAAGCCCGGC
GTGGATCCAG ACCGGGCCGT CACCCTGGAG CTGGAGCAGT TTCGAAAGGA TGGTTCCACC
ATCTGGACCG AGGTGGTGGT CACCTTTCTG CGGGACGCAT CCGGCCGGCC GGCCAGCATG
CTGGCAGCGG CCCGGGACAT CTCGGAACGC AAACGGGCGG AAAATGCCAT TCGCAAAAGC
GAAGAACGCT ACCGCATGCT GGCCGAAAAC ATCAGTGAAG TGATCTACAT TCTTGACAGC
GACACCTTCA CCTTCCGCTA TGTAACCCCT TCCGTGGAAA AACTGCACGG CCTGAGCCCG
GAAGTGTTCA TGAAACTGCC CCTTGCAAGG GTGTTGACAC CCGAGACCCT GGCCAAAGTC
ACCCGGACCA TTCAGACCGA GCTGGCCCAG GACGGCTCCC CCGGCCTGGA TCCGGACCGG
TTTGTCTCCC TTGACATGGA AGCCTACCGT GCCGATGGCT CCACCGTGTG GGTGGAAAAC
ACCGCCCGTT TTCTGAGAGA TGACAATGGC AGGCCCGTAT CCATACTGGG TGTGGCAAGG
GACATCTCGG AACGCAAAAG GGCTGAAACT GCCATTCGAA AAAGTGAAGA GCGCTACCGC
ATGCTGGCGG AAAACATCAG TGAAGCCATT TTCACCATTG ATCTTGCCAC ACTGAAACAC
ACCTATGCCA GCCCGTCGGT CAAGCAAATG TATGGTTTTA CTCCGGAGGA GTTCATCGCC
CGGCCCATTG AACAGGTGAT CGTTCCCAAA TCCCTGGACC GGCTGATCGT GGCCGTGGCC
GCGGAACTGG ACAAGGACGG CAAGCCCGGC GTGGACCCGG ACCGTAACGT AACCCTTGAG
CTGGAGCTCT ACCGCAAGGA CGGCTCCTCC GTATGGGTGG AAGCTTCAGC CAAGGCCCTG
CGCAACGCGG ATGGGGAGCT GGTGGCGGCC CTGGGCGTGG CCAGGGATAT TTCCGAACGG
AGAAAAGCGG AACAGGCCCT TCGGGAAAGC GAGGAAAAAT TCCGCACCCT GGTGGAAAAA
ACCAACGAGC TGATTTTTTC AATGTCGCCG AAAGGTGTCT ACACCTATAT GTCACCGAAC
GTAAAAGAGC TGATGGGCGC CGATGCCGCC GACGTGGTCG GCCGCAATTA CGCCGAAAAT
ATTCACCGCG ACGACAGGCC CTCCTGCGAG GCCGATGTCC GTACGCTGGT TGAGACCGGC
GTGTTGCCGG AAGGCAGAGA ATACAGGGTC CAGCACAAGA ATGGCTCATG GCGATGGCAC
GAAACCAGCC TTTCCGCCCA GAAGGATAAA GCGGGTAACG TGGCCTCCAT TATCGGCATT
GCAAGAGATG TCACCGACAG AAAAGCCAGC GAGGCGGCCC ACAACCGATT GCTTTCATGG
CACGCCGGCA TCAACCGCAT CCACGACCGT CTTCTGAGCG CGGACAACCT GGAAGATCGT
CTCAAGGTGA TCACCGACGG CGTTGTGGAT TCCTTTGACT CCCTTCTTTG CCGCATCTGG
ATCATGGGGG CGCCGGATCG TTGCGACGGG CGCTGCCCCC ACGGCCGTGA CAAAAAATCA
GCCCGCCTGT GCCGCGGTGT CAGTCAGTGC CTGCACCTGA CAGCCAGTTC CGGCGACACG
GACCGCACCG ACGGTTACTA CAGCCGGGTG CCCCTTGGGT ATGAGGGGAT TCAATGGATC
GAGGGCAGAG AAGTGCCCGG TTTTCTGACC AATGACGCGC AAAACACTCC CATTGTAAAA
GACAGGGACT GGATCGACAA AAACAGTATC GTCTCTTTCA CCGGCCGGCA ACTGCGGGAC
AACGCCGGCA ACGTGATCGG CGCGCTGGTC TCCTTTGCCA CACACGCCGT AGACAGAGAA
GAGTACGAGA TGTACAGCAA CCTGGCCAAC ACCGCCTCCC AGGTGGTGCT GTCCAGCCTG
GCCGAGGCCT CAACGAAGCA GGCAAAAGAG GCGGCGGAAG CGGCCAGCCG GGCCAAGAGC
GAATTCCTGG CCAACATGAG CCACGAAATC CGAACCCCCA TGAACGGCGT CATCGGCATG
ACCGACCTGC TCCTGGACAC CGACCTTACC GAAGAGCAGC TGGAATACGC GGAAAGCGTG
AGAAGCAGCG CGGAGTCCCT GCTGGTAATC ATCAACGATG TGCTTGATTT TTCAAAAATA
GAGGCCGGTA AGCTCAAGCT GGAAGAGATC GACTTTGACC TTGAAAAGCT GCTCAAGGAG
GTTAACGACA CCATGGCTCC CAGGGCCCGG CGCAAACGCA TCCGCCACGA TGTCATCCTG
AAGGAAGAGG TTCCTTCCCT GCTTAAGGGC GACCCGGTGC GGCTGCGGCA GATTCTTTTC
AACCTGTGCG AAAACGCCGT AAAATTCACC GAGGCCGGAT CGGTGAAGGT TGCGGTTTCC
GCGCCGCACC AGACCGACAC AACAGCGACC CTGCTTTTTG AGGTGACCGA CACCGGCATC
GGCATTGCAC CGGAGCATCA CCAGGCCATT TTTGAGTCTT TTTCCCAGGT GGACGCCTCC
ACCACGCGGC AGTACGGCGG CACAGGTCTG GGCCTGGCCA TCACAAAAAG ACTGGTCTCT
CTGCTGGACG GAGAGATCGG CGTAACCAGC GAGCCGGGAA AAGGTTCCAC CTTCTGGTTC
ACCCTGGCCC TTGAAAAACA GCCGCAGCAG AAGGCCGGCG ATTCGGTGGG CGAAACGCCG
GTCCCGGCCT TTTCCGGCAG CATTCGACCT TTGCGCATCC TTCTGGTGGA AGACAGCGCC
ATCAGCCGGC GGGTCCTTTT GCAGATGCTG GACAAAATGG GCCATACCGC CACCATTGCC
GTCAACGGGG CCGAAGCGGT GAAGCTCTTT TCCCGCCAAT CCTTTGACAT GGTGCTCATG
GATATTCAGA TGCCGGTCAT GGATGGTATC GCCGCCACAA AACAGATAAA GTCCATGCAG
AAAGAGACCG GGAAAAAGGT ACCGGTGATC GCCATCACGG CCAATGCCAT GGCCGGAGAC
CGGGAGCGCA TTCTTTCCCA GGGGCTGGAC GACTACGTAG CCAAACCGGT GAAAATGGAA
ACCCTGGCAG ACGCCATTCG GCGGAATACG GTCTGA
|
|---|
| Protein sequence | MGIKKFFDRL LSPPPDTARI QELLRTEEHY HLLANHIHEV IFTMDMDFKY TYISPSVEHQ
RGFTVEEAIH LPFDKNVTPA SVEKIIDLVT RGISANREGR GPTPPQTITI EVYCKDGSTR
WSELTGDFLY DKNGNPTGLI GVSRYVDDRE EVREELIRFK QAIDGTSEAI GFSTPSRHHV
YHNKAFARLF GYDTPEDLET AGGPVTRFKD PRTAEDLFST IVSGRPWSGE VVMIDRNGRE
FIALHRADAI RDRNGEITLL MGSIIDISAL KKRDTEFRQQ ESLYRLLAEN TSEIVSIIDL
KDLSHRYLSP SVEKIRGFTL EEAMGHSLDQ VLAPASHELA ITAITEELAR DGQPGVDPDR
HRVLELEQLR KDGSTVWTEL VASFLRDTEG KPTSILTAAR DITERKKAEA AIRESETRYR
MVAENIGEVI YIFDLNALRY TYASPSVRHT YGYTVEESLS LPIDKVFTPD SINRILETIE
KELALEGKPG VDPDRHVTLE LEQYHKNGSV LWIETTVKGL RDETGRLVSV VGVSRDITER
KKAEAAIRQS EARYRLLAEN ISEIIYIFDI TRLQYAYVSP SVSTVCGYTP EELLTIPLDT
LVTPSSFDRV VERLTEELQK NGKSGVDPDR AVTLELEVYH KDGSLLWMET TVKAVRDETG
HPGLVAGVAR NITERKTAEA AIREREKLYR LLADNITEMI SIIDIETQKH LYISPSVEHV
RGFTVEEVLV QPFDRIFTSE SYRLAMATLA EEIEKDGKPG VDPDRAVTLE LEQFRKDGST
IWTEVVVTFL RDASGRPASM LAAARDISER KRAENAIRKS EERYRMLAEN ISEVIYILDS
DTFTFRYVTP SVEKLHGLSP EVFMKLPLAR VLTPETLAKV TRTIQTELAQ DGSPGLDPDR
FVSLDMEAYR ADGSTVWVEN TARFLRDDNG RPVSILGVAR DISERKRAET AIRKSEERYR
MLAENISEAI FTIDLATLKH TYASPSVKQM YGFTPEEFIA RPIEQVIVPK SLDRLIVAVA
AELDKDGKPG VDPDRNVTLE LELYRKDGSS VWVEASAKAL RNADGELVAA LGVARDISER
RKAEQALRES EEKFRTLVEK TNELIFSMSP KGVYTYMSPN VKELMGADAA DVVGRNYAEN
IHRDDRPSCE ADVRTLVETG VLPEGREYRV QHKNGSWRWH ETSLSAQKDK AGNVASIIGI
ARDVTDRKAS EAAHNRLLSW HAGINRIHDR LLSADNLEDR LKVITDGVVD SFDSLLCRIW
IMGAPDRCDG RCPHGRDKKS ARLCRGVSQC LHLTASSGDT DRTDGYYSRV PLGYEGIQWI
EGREVPGFLT NDAQNTPIVK DRDWIDKNSI VSFTGRQLRD NAGNVIGALV SFATHAVDRE
EYEMYSNLAN TASQVVLSSL AEASTKQAKE AAEAASRAKS EFLANMSHEI RTPMNGVIGM
TDLLLDTDLT EEQLEYAESV RSSAESLLVI INDVLDFSKI EAGKLKLEEI DFDLEKLLKE
VNDTMAPRAR RKRIRHDVIL KEEVPSLLKG DPVRLRQILF NLCENAVKFT EAGSVKVAVS
APHQTDTTAT LLFEVTDTGI GIAPEHHQAI FESFSQVDAS TTRQYGGTGL GLAITKRLVS
LLDGEIGVTS EPGKGSTFWF TLALEKQPQQ KAGDSVGETP VPAFSGSIRP LRILLVEDSA
ISRRVLLQML DKMGHTATIA VNGAEAVKLF SRQSFDMVLM DIQMPVMDGI AATKQIKSMQ
KETGKKVPVI AITANAMAGD RERILSQGLD DYVAKPVKME TLADAIRRNT V
|
|---|
| |