| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0020 |
|---|
| Symbol | |
|---|
| ID | 5692834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 20846 |
|---|
| End bp | 22312 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641262596 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001527907 |
|---|
| Protein GI | 158520037 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0144278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGTC TTTTTCTTAT TTTCTGCCTG CTGGTTTCCG GATTTTTTTT GGTGGCCCCC
GGTCCGGTAT CCGCCGGTGA TGCCCACACG GTTTATGTGG TCAAGGTGGC CGGCGACGTG
GCTCCGGGTA TGGCCGCCTA CCTGAAACGG GCGCTTGATG ATATTCCGGA AGCGCCACAC
CAGACCATTG TCCTGGACCT GGATACCTTT GGGGGCCGGG TCGATTCGGC CCTGATGATC
GTGGACCTGA TCACGGCGGC AGATAGCAAG GGGAAAACCA TCGCCTTTGT CTCCAGGAAG
GCCATCTCGG CCGGGGCGCT GATCGCCCTG GCCTGCAACG AGCTGGTCAT GAAGCCCGGC
ACCACCATCG GCGACTGCGC GCCCATCATG GTGGGAAGCC AGGGGCCGGA AATGCTGGGG
GAAAAATTCC AGTCCCCGCT GCGGGCCAAG TTCCGGGCCC TGGCCAAAAA AAACGGGTAT
CCCGAGGCCC TGGCCGAGTC CATGGTCACC GCCGACATGG AGGTGTTCCG GGTGGTGACC
AAAGACGGCG GCACATTCTA CATGGACGCC CTGGAGTACG AGGAGATGGA TGAAGCCCAA
AAATCGGCCG TGGTGTCTAA AAAAACCGTG GTGGCCAAAG GCGAGCTGCT CACCATGGAC
GACATTGAGG CCCGGGACCT GGGATTTTCA CAAATGACCG TCTCCAGCGT AAAGGAGATG
CTGGCCGCCA TGGGTATTGA CGATACCGAT ATCGTTGTCA TGGAACAGCA GTGGTCCGAG
GGCCTGATGC GCTGGCTGGG CACGCTTGCG CCCCTGCTGA TGCTGATCGG CCTGGGAGCC
CTGTACACGG AAATCAAGTC GCCGGGTTTC GGTGTTCCCG GCATCGTGGG CATCATCTGT
CTGGCCCTGT TTTTCATGAA CCAGTACGCC GTGGGCCTGG CCGACTACAC CGAACTGCTG
ATCTTTCTGC TGGGCCTGGT GCTGATCGGG ATTGAAACCT TTGTGCTGCC CGGGTTCGGC
ATTGCCGGCA TTGCCGGCGC CGTCTGCATC ATCGTCTCTT TTGTCCTGGC CATGCAGGGG
TTTGTGCTGC CCGACCCGGA CATGCCCTGG CAGACGGACC TGATGGTAAA CAACGTGATC
CAGGTGCTGG GCGCCGTGGT GACCGCCTTT CTGGCGGCCC TGTTTTTGCT TCGGTTTGTG
CTGCCCCGGT TGTCGGCGGT GGTCAGCGGG CCGTACCTAA GTGCCACCCT GAGCGAGGCC
CGGGCCGATG CCACGGCCAA CACCGGCGCC GGCGTTGGCG ACCGGGGCAC AGCCGCCACC
TCGCTGCGGC CGGCGGGAAA GATGAAAATC GGCCCGGAAA TGTATGACGT GGTCACAGAG
GGCGAATTCC TGGACAAAGG CACCCCGGTG GTAATTATTG CGGTTCGCGG CAACGTGCTG
GTGGTGTCAA GGGAGACAAC GCAATGA
|
|---|
| Protein sequence | MKRLFLIFCL LVSGFFLVAP GPVSAGDAHT VYVVKVAGDV APGMAAYLKR ALDDIPEAPH
QTIVLDLDTF GGRVDSALMI VDLITAADSK GKTIAFVSRK AISAGALIAL ACNELVMKPG
TTIGDCAPIM VGSQGPEMLG EKFQSPLRAK FRALAKKNGY PEALAESMVT ADMEVFRVVT
KDGGTFYMDA LEYEEMDEAQ KSAVVSKKTV VAKGELLTMD DIEARDLGFS QMTVSSVKEM
LAAMGIDDTD IVVMEQQWSE GLMRWLGTLA PLLMLIGLGA LYTEIKSPGF GVPGIVGIIC
LALFFMNQYA VGLADYTELL IFLLGLVLIG IETFVLPGFG IAGIAGAVCI IVSFVLAMQG
FVLPDPDMPW QTDLMVNNVI QVLGAVVTAF LAALFLLRFV LPRLSAVVSG PYLSATLSEA
RADATANTGA GVGDRGTAAT SLRPAGKMKI GPEMYDVVTE GEFLDKGTPV VIIAVRGNVL
VVSRETTQ
|
|---|
| |