| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4511 |
|---|
| Symbol | |
|---|
| ID | 8228114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5442852 |
|---|
| End bp | 5443871 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644932357 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003088877 |
|---|
| Protein GI | 255038256 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.64274 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAT TAGGACTATT AATTACCAAC CGGCACCGTT TATTGAGCGT AGCAGCGATT
CTGGATGTAT TCGAATCGGT GAACAGCTTT TATGAACGGG CCAATCAGCC ACCCTTCTTC
CACATTACAT TGTTTTCGCC GGACCCCGAG CCGGTGGAAT TTTACGGTGC ATATTCAATG
CAGCCGATCA GCCAGTTTAT CAAGCAGGAC CTTGTTCTCG TGCCGGCATT CGGTGCTGGC
GACGTCCAGC TTTCGATTAT GAGTAACCAG AGCTGCATTC CGTGGCTTTG GGAACAATAC
AAAAGCGGGG CTGAACTGGC CAGCTTCTGC ACCGGGGCAT TCCTGTTCGC CGCGGCCGGC
CTTTTGAATG GCAAGCACGC CACTACGCAC ATCGACGCGG CCGAAACGCT CGCATCCAAC
TTCCCGGAGA TCATTATGAA AAGCGACGCC GTTGTGACCG AGGATAAGGG CATTTTCACA
AGCGGCGGCG CTACCAGCAG TTTTCACCTG ATGCTTTACC TTATTCAGCG TTTGTGCGGA
AAAGATCTCA CGCTGCGCAC CGCCAAAATG TTCGCCATCG ACATGGACCG CGAGCAGCAA
ACCTATTTCG GGACTTTCGC GCCGCCGCAA AACCACGGCG ACGGGCTGGT GAATATGGCG
CAGCGGAAAA TCGAGAAGGA GTATCAGGAA GGAAGCACGA TTGAAGTACT CATTCAGGAC
ATTCCGGCAA GTCGCAGGAA TGTGGTGCGG CGGTTTAAGC AGGCAATCGG CGTGACGCCC
ATCGAATATT TGCAGCGCAC GCGCATCGAA GCAGCGAAGC GGCTCCTCGC GCAAACCGAC
CAGAGCGTGC TGGAAGTAAT GCTCAATTCC GGCTACAACG ACCTCAAATC GTTCCGGCAA
CTCTTCAAGA AAAGTACCGG TGTGACGCCT AAGGAATACC GCGACAAATT CAATATCGCC
CGGCTAGAAA CCGGTGCCCG ATGGAACCGC CCGATGAGCG GAGCCGCCTA TCTCGACTAA
|
|---|
| Protein sequence | MVKLGLLITN RHRLLSVAAI LDVFESVNSF YERANQPPFF HITLFSPDPE PVEFYGAYSM
QPISQFIKQD LVLVPAFGAG DVQLSIMSNQ SCIPWLWEQY KSGAELASFC TGAFLFAAAG
LLNGKHATTH IDAAETLASN FPEIIMKSDA VVTEDKGIFT SGGATSSFHL MLYLIQRLCG
KDLTLRTAKM FAIDMDREQQ TYFGTFAPPQ NHGDGLVNMA QRKIEKEYQE GSTIEVLIQD
IPASRRNVVR RFKQAIGVTP IEYLQRTRIE AAKRLLAQTD QSVLEVMLNS GYNDLKSFRQ
LFKKSTGVTP KEYRDKFNIA RLETGARWNR PMSGAAYLD
|
|---|
| |