Gene Dfer_4343 details

Gene Information

• Locus tag: Dfer_4343
• Symbol: rplC
• ID: 8227946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dyadobacter fermentans DSM 18053
• Kingdom: Bacteria
• Replicon accession: NC_013037
• Strand: +
• Start bp: 5269739
• End bp: 5270359
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 644932190
• Product: 50S ribosomal protein L3
• Protein accession: YP_003088710
• Protein GI: 255038089
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.0239943
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.123527
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTGGTT TAATTGGTAA AAAAATCGGA ATGACTAGTT TGTACAATGC TGACGGGCAG 
GCTCTGGCAT GTACTGTGAT CCAAGCTGGT CCTTGTGTTG TTACACAAGT TAGGTCCGAA 
GAAAAGGATG GCTACAAGGC TATCCAGTTA GGTTTTGGTG AGAAGAAAGA AAAGAACACC 
TCCCAGCCTC TGATTGGCCA CTTCAAGAAA GCCAACACGA CTCCCAAGCA AAAATTGGTT 
GAGTTCAAGG AATTCGAAGT GGAACATGAA CTTGGAACTT CACTGTCCGT TCAGGACATC 
TTTGAAGAAG GCGAGTTTGT TGACGTAGTA GGATCTGCCA AAGGTCGTGG TTTCCAAGGT 
GTTGTAAAAC GTCACGGATT CGGCGGGGTA GGTGGTCAAA CTCACGGTCA GCACAACAGG 
GCCCGTCACC CAGGTTCGAT TGGTGCTTGT TCATTCCCAT CACGCGTATT CAAAGGTATC 
CGTATGGGTG GACGCATGGG TAACAATCGT GTAAAGATTC AGAATTTGCG TATTCTGAAA 
GTGATACCTG AGCAGAACAT TCTCGTTGTG AGTGGCTCAG TACCGGGTTC AAAGAATTCA 
TTTCTAATCA TTGAGAAGTA G 

 

Protein sequence

MSGLIGKKIG MTSLYNADGQ ALACTVIQAG PCVVTQVRSE EKDGYKAIQL GFGEKKEKNT 
SQPLIGHFKK ANTTPKQKLV EFKEFEVEHE LGTSLSVQDI FEEGEFVDVV GSAKGRGFQG 
VVKRHGFGGV GGQTHGQHNR ARHPGSIGAC SFPSRVFKGI RMGGRMGNNR VKIQNLRILK 
VIPEQNILVV SGSVPGSKNS FLIIEK