Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2363 |
Symbol | |
ID | 3757379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 2384323 |
End bp | 2386005 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637783259 |
Product | type II/IV secretion system protein |
Protein accession | YP_388855 |
Protein GI | 78357406 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.158902 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTGG CAGAACGACT CATGCGCTCC ACCCGGCGCA CGCCGGCGCC TTTGTCCGGA GTCCCCGTCC GCAGCGAAGA CGACGCGCTG GAACAGGCTT TCCGCCGCAG TCCGCAACCT GCCACGCCCC GGACACCGCA TACGGATTCC GCTCACGCTG AAACAACCGG AACGGTCTCT GCGCCCGCCG GAACGCATCC GCCGGACATG CGGCACGCAT CCGCACCGGC ACATGCACGG CAGCCGGCGG CACCGGCAGA GCACACCGGA GCTTTGCAGT CTCCGCCGGA CGCAGACGTA CCGGCTCCCG CCTCTTCCGG CGCTGCACGT ACTGCCATGC GCCAGCAGGC CTTCCGGCCT GCGCGGTCCG GCAACAGCAC TGTGTCCTGC GCCGCCCCGC AGGAAGAAGG CTATTACGAA GCCAAAGCCC GTGTGCATGC CCGCGTGCTG GAGCTTATGG ACATCAGTGC GGCCGAACAC CTCAATCCGG AGGTACTGGG TACTGAAATC CGCCGGCTGG TGGAAAAGGT ACTGCATGAA GAATACCGGC AAATTCCGCT CAACAGTCAG GAGCGCCGAC GCGTAGCCGA GGAAATACAG CATGAAATAC TGGGCCTCGG CCCGCTGGAG CCTCTGCTGG CCGACCCTTC TGTTTCGGAT ATTCTGGTGA ACAATTACCG GCAGGTATAT GTGGAGCGCG GGGGCAAGCT GCACAAGGCG GGTGTACGTT TTCACGATGA CGAACATCTG CGGCAGATCA TCGACCGCAT TGTTTCACGC ATCGGGCGGC GCGTGGACGA ATCATCGCCC ATGGTGGACG CCCGTCTTGC TGACGGCTCA CGAGTCAACG CCATAATCCC CCCGCTGGCG CTGGACGGCC CCAGCCTCTC CATACGCCGT TTTTCCAAGG ACCCGCTGGA ACTGGAAGAC CTGATACGCT TCAAGGCACT GACCCCGGAA ATGGGCGAAG TGCTACGCGG TATAGTTAAA GCCCGGCTGA ACATCATTGT CTCCGGCGGC ACCGGATCGG GCAAAACAAC CATGCTCAAC TGCCTGTCGC GCTTTGTGCC CCACGACGAA CGCATTGTGA CCATTGAAGA CGCTGCGGAA CTGCAGCTGA AACAGGAGCA CGTGGTCAGG CTGGAAACAA GACCGGCAAA CATAGAAGGC CACGGCGAAA TAACGGCCCG TGATCTGGTG AAAAACTGCC TGCGGATGCG TCCGGACAGA ATCATCGTGG GCGAAGTGCG TTCCGCCGAA GTGCTGGACA TGCTGCAGGC CATGAACACC GGTCATGACG GTTCACTGAC CACAATCCAC GCCAACAGCC CGCGTGACTG CCTGATGCGT CTTGAAACCA TGGTGGCCAT GTCGGGGCTG AACATCAGCA CGCTGTCCCT TAAACGCTAT ATCACTTCCG CCGTTGACGT CATTGTGCAG GTTTCGCGGC TTTCTGACGG TTCGCGCAAA CTGACCAGTC TGACAGAAAT AACCGGTATG GAAGGAGAGG CCGTGACCAT GCAGGAAATA TTCTCCTTCC GGCAGACCGG TGTGGGGCAG GACGGCAAGG TCACAGGCAG CTTTGCCGGT GCCGGCATCA GACCAAGATT CGCCTCGCGG CTTGCCGCGG CGGGCATTCC GCTGGACGGG ACCCTGTTTG AAAAAGGCAT GGAACAGGCG TGA
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Protein sequence | MKLAERLMRS TRRTPAPLSG VPVRSEDDAL EQAFRRSPQP ATPRTPHTDS AHAETTGTVS APAGTHPPDM RHASAPAHAR QPAAPAEHTG ALQSPPDADV PAPASSGAAR TAMRQQAFRP ARSGNSTVSC AAPQEEGYYE AKARVHARVL ELMDISAAEH LNPEVLGTEI RRLVEKVLHE EYRQIPLNSQ ERRRVAEEIQ HEILGLGPLE PLLADPSVSD ILVNNYRQVY VERGGKLHKA GVRFHDDEHL RQIIDRIVSR IGRRVDESSP MVDARLADGS RVNAIIPPLA LDGPSLSIRR FSKDPLELED LIRFKALTPE MGEVLRGIVK ARLNIIVSGG TGSGKTTMLN CLSRFVPHDE RIVTIEDAAE LQLKQEHVVR LETRPANIEG HGEITARDLV KNCLRMRPDR IIVGEVRSAE VLDMLQAMNT GHDGSLTTIH ANSPRDCLMR LETMVAMSGL NISTLSLKRY ITSAVDVIVQ VSRLSDGSRK LTSLTEITGM EGEAVTMQEI FSFRQTGVGQ DGKVTGSFAG AGIRPRFASR LAAAGIPLDG TLFEKGMEQA
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