Gene Dde_2363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2363 
Symbol 
ID3757379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2384323 
End bp2386005 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content61% 
IMG OID637783259 
Producttype II/IV secretion system protein 
Protein accessionYP_388855 
Protein GI78357406 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.158902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTGG CAGAACGACT CATGCGCTCC ACCCGGCGCA CGCCGGCGCC TTTGTCCGGA 
GTCCCCGTCC GCAGCGAAGA CGACGCGCTG GAACAGGCTT TCCGCCGCAG TCCGCAACCT
GCCACGCCCC GGACACCGCA TACGGATTCC GCTCACGCTG AAACAACCGG AACGGTCTCT
GCGCCCGCCG GAACGCATCC GCCGGACATG CGGCACGCAT CCGCACCGGC ACATGCACGG
CAGCCGGCGG CACCGGCAGA GCACACCGGA GCTTTGCAGT CTCCGCCGGA CGCAGACGTA
CCGGCTCCCG CCTCTTCCGG CGCTGCACGT ACTGCCATGC GCCAGCAGGC CTTCCGGCCT
GCGCGGTCCG GCAACAGCAC TGTGTCCTGC GCCGCCCCGC AGGAAGAAGG CTATTACGAA
GCCAAAGCCC GTGTGCATGC CCGCGTGCTG GAGCTTATGG ACATCAGTGC GGCCGAACAC
CTCAATCCGG AGGTACTGGG TACTGAAATC CGCCGGCTGG TGGAAAAGGT ACTGCATGAA
GAATACCGGC AAATTCCGCT CAACAGTCAG GAGCGCCGAC GCGTAGCCGA GGAAATACAG
CATGAAATAC TGGGCCTCGG CCCGCTGGAG CCTCTGCTGG CCGACCCTTC TGTTTCGGAT
ATTCTGGTGA ACAATTACCG GCAGGTATAT GTGGAGCGCG GGGGCAAGCT GCACAAGGCG
GGTGTACGTT TTCACGATGA CGAACATCTG CGGCAGATCA TCGACCGCAT TGTTTCACGC
ATCGGGCGGC GCGTGGACGA ATCATCGCCC ATGGTGGACG CCCGTCTTGC TGACGGCTCA
CGAGTCAACG CCATAATCCC CCCGCTGGCG CTGGACGGCC CCAGCCTCTC CATACGCCGT
TTTTCCAAGG ACCCGCTGGA ACTGGAAGAC CTGATACGCT TCAAGGCACT GACCCCGGAA
ATGGGCGAAG TGCTACGCGG TATAGTTAAA GCCCGGCTGA ACATCATTGT CTCCGGCGGC
ACCGGATCGG GCAAAACAAC CATGCTCAAC TGCCTGTCGC GCTTTGTGCC CCACGACGAA
CGCATTGTGA CCATTGAAGA CGCTGCGGAA CTGCAGCTGA AACAGGAGCA CGTGGTCAGG
CTGGAAACAA GACCGGCAAA CATAGAAGGC CACGGCGAAA TAACGGCCCG TGATCTGGTG
AAAAACTGCC TGCGGATGCG TCCGGACAGA ATCATCGTGG GCGAAGTGCG TTCCGCCGAA
GTGCTGGACA TGCTGCAGGC CATGAACACC GGTCATGACG GTTCACTGAC CACAATCCAC
GCCAACAGCC CGCGTGACTG CCTGATGCGT CTTGAAACCA TGGTGGCCAT GTCGGGGCTG
AACATCAGCA CGCTGTCCCT TAAACGCTAT ATCACTTCCG CCGTTGACGT CATTGTGCAG
GTTTCGCGGC TTTCTGACGG TTCGCGCAAA CTGACCAGTC TGACAGAAAT AACCGGTATG
GAAGGAGAGG CCGTGACCAT GCAGGAAATA TTCTCCTTCC GGCAGACCGG TGTGGGGCAG
GACGGCAAGG TCACAGGCAG CTTTGCCGGT GCCGGCATCA GACCAAGATT CGCCTCGCGG
CTTGCCGCGG CGGGCATTCC GCTGGACGGG ACCCTGTTTG AAAAAGGCAT GGAACAGGCG
TGA
 
Protein sequence
MKLAERLMRS TRRTPAPLSG VPVRSEDDAL EQAFRRSPQP ATPRTPHTDS AHAETTGTVS 
APAGTHPPDM RHASAPAHAR QPAAPAEHTG ALQSPPDADV PAPASSGAAR TAMRQQAFRP
ARSGNSTVSC AAPQEEGYYE AKARVHARVL ELMDISAAEH LNPEVLGTEI RRLVEKVLHE
EYRQIPLNSQ ERRRVAEEIQ HEILGLGPLE PLLADPSVSD ILVNNYRQVY VERGGKLHKA
GVRFHDDEHL RQIIDRIVSR IGRRVDESSP MVDARLADGS RVNAIIPPLA LDGPSLSIRR
FSKDPLELED LIRFKALTPE MGEVLRGIVK ARLNIIVSGG TGSGKTTMLN CLSRFVPHDE
RIVTIEDAAE LQLKQEHVVR LETRPANIEG HGEITARDLV KNCLRMRPDR IIVGEVRSAE
VLDMLQAMNT GHDGSLTTIH ANSPRDCLMR LETMVAMSGL NISTLSLKRY ITSAVDVIVQ
VSRLSDGSRK LTSLTEITGM EGEAVTMQEI FSFRQTGVGQ DGKVTGSFAG AGIRPRFASR
LAAAGIPLDG TLFEKGMEQA