Gene Daci_1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1042 
SymbolsecY 
ID5746596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1154423 
End bp1155742 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content57% 
IMG OID641296122 
Productpreprotein translocase subunit SecY 
Protein accessionYP_001562073 
Protein GI160896491 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0201] Preprotein translocase subunit SecY 
TIGRFAM ID[TIGR00967] preprotein translocase, SecY subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTACTA GCGCAGCTCA AATTGCAAAA ACCGGAAAAT TCGGCGATCT TCGCCGCCGT 
CTGGTTTTTC TGTTGCTCGC GCTGGTCGTT TACCGGATCG GGGCTCATAT CCCCGTGCCG
GGCATCGATC CAGCGCAGCT GCAGCAGCTG TTCAATGGCC AGCAGGGCGG CATTCTCAAT
CTGTTCAACA TGTTCTCGGG TGGGGCGCTC TCGCGCTTCA CGGTGTTCGC ACTGGGGATC
ATGCCGTACA TCTCGGCATC GATCATCATG CAGCTCATGA CCTACGTGGT CCCTACATTC
GAGCAGCTGA AAAAGGAAGG TGAATCGGGT CGTCGCAAGA TCACCCAGTA CACCCGCTAC
GGCACATTGG GCCTGGCGAT TTTTCAGTCC CTGGGAATTG CCGTGGCTCT GGAAAGCTCC
GCAGGTCTGG TTCTGAGCCC TGGCTTCGGC TTCCGCCTCA CGGCGGTGGT CAGCCTGACG
GCCGGCACCA TGTTCCTGAT GTGGCTCGGT GAACAGATCA CGGAACGTGG TCTGGGCAAC
GGCATCTCGA TCCTCATCTT TGGAGGTATC GCCGCAGGTC TGCCGAGCTC CATCGGTGGT
CTGCTGGAGC TGGTGCGCAC CGGTGCCATG AGCATCCTGG CCGCGATCTT CATCGTTCTC
GTGGTGGCAG CCGTGACGTA CTTCGTCGTG TTTGTCGAGC GGGGACAACG CAAGATCCTG
GTGAACTATG CGCGTCGTCA GGTGGGTAAC AAGGTGTATG GTGGCCAGTC TTCGCACTTG
CCGCTGAAGC TGAACATGGC GGGGGTCATT CCTCCCATCT TCGCTTCCTC GATCATCTTG
CTGCCGGCGA CCGTTGTGAA CTGGTTCAGT GCAGGGGAAT CTATGCGCTG GCTGAAGGAC
ATTGCTAGCA CGCTGACCCC CGGTCAGCCG ATCTATGTGA TGCTCTACGC CACTGCCATC
ATCTTCTTCT GCTTCTTCTA CACGGCCCTG GTGTTCAACA GCCGGGAAAC CGCCGACAAC
CTGAAGAAGA GTGGTGCCTT CATCCCCGGG ATCCGTCCCG GTGACCAGAC GGCCCGCTAC
ATTGACAAGA TCCTGGTTCG CCTGACCCTG GCTGGCGCGG TGTACATCAC ATTCGTGTGC
TTGTTGCCCG AGTTCCTGAT CCTGAAGTAC AACGTTCCGT TCTACTTCGG TGGCACATCA
CTGCTGATTA TTGTGGTGGT GACCATGGAC TTCATGGCCC AGGTGCAGAA CTACATGATG
TCGCAACAGT ACGAATCGCT CCTCAAAAAG GCGAACTTCA AAGCGACACT TGGCAATTGA
 
Protein sequence
MATSAAQIAK TGKFGDLRRR LVFLLLALVV YRIGAHIPVP GIDPAQLQQL FNGQQGGILN 
LFNMFSGGAL SRFTVFALGI MPYISASIIM QLMTYVVPTF EQLKKEGESG RRKITQYTRY
GTLGLAIFQS LGIAVALESS AGLVLSPGFG FRLTAVVSLT AGTMFLMWLG EQITERGLGN
GISILIFGGI AAGLPSSIGG LLELVRTGAM SILAAIFIVL VVAAVTYFVV FVERGQRKIL
VNYARRQVGN KVYGGQSSHL PLKLNMAGVI PPIFASSIIL LPATVVNWFS AGESMRWLKD
IASTLTPGQP IYVMLYATAI IFFCFFYTAL VFNSRETADN LKKSGAFIPG IRPGDQTARY
IDKILVRLTL AGAVYITFVC LLPEFLILKY NVPFYFGGTS LLIIVVVTMD FMAQVQNYMM
SQQYESLLKK ANFKATLGN