| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0510 |
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| Symbol | rpoB |
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| ID | 5746052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 539519 |
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| End bp | 543631 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641295578 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001561541 |
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| Protein GI | 160895959 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.301661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTATT CTTACACCGA ACGCAAGCGA ATCCGCAAAA GCTTCGGGAG CCGCGACAGC
GTGCTCGAAG TGCCTTACCT GCTGCAGATG CAAAAAGATG CATATACCGC ATTCTTGCAG
TCAGATGTAG CCCCCAAAAA ACGCACCATC GAAGGCCTGC AAGCGGCCTT CAACTCCGCC
TTCCCCATCG TCTCCCACAA CGGTTTTGTG GAGATGAAGT TCGTCGAGTA CAACCTCGCC
AAGCCTGCTT TCGATGTGCG CGAGTGCCAG ACCCGTGGTC TGACGTTCGC CTCCGCCGTG
CGCGCCAAGG TCCAGTTGAT CATCTATGAC CGTGAGTCTT CGACCTCGCA GTCCAAGGTG
GTCAAGGAAG TCAAGGAGCA AGAGGTCTAC ATGGGCGAAG TGCCCCTGAT GACCGAAAAG
GGCTCGTTCA TCATCAACGG CACCGAGCGT GTCATCGTCT CGCAGCTGCA CCGCTCGCCT
GGCGTGTTCT TCGAGCACGA CAAGGGCAAG ACCCACAGCT CGGGCAAGCT GCTGTTCTCG
GCACGCATCA TTCCTTACCG CGGCTCGTGG CTGGACTTCG AGTTCGACCC CAAGGACCTG
CTGTTCTTCC GCGTCGACCG TCGCCGCAAG ATGCCCGTGT CCATTCTGCT GAAGGCCATC
GGCCTGACGC CGGAATCGAT CCTGGCCAAC TTCTTCGTCA ACGACAACTT CCGCCTCATG
GATTCGGGCG CGCAGATGGA GTTCGTCTCC GAGCGCCTGC GCGGCGAAGT CGCGCGCTTC
GACATCACCG ACAAGTCGGG CAAGGTCGTG GTCGCCAAGG ACAAGCGCGT CACCGCTCGC
CACACGCGTG AGCTGGAGCA GTCGGGCACC AAGTTCATCA GCGTCCCCGA AGATTTCCTG
ATCGGCCGCG TGGTCGCCAA GAACATCGTC GATCCGGACA CGGGCGAGAT CATCGCCAAG
GCCAATGAAG AGCTGACCGA GTCCCTGCTC AAGAAGCTGC GCAGCGCCGG CATCCAGGAT
CTGCAGTGCA TCTACACGAA TGAGCTGGAC CAGGGCGCCT ACATCTCGCA GACCCTGCGC
ACCGACGAAA CCGTGGATGA GTTCGCTGCA CGCGTGGCCA TCTACCGCAT GATGCGCCCC
GGCGAGCCGC CGACCGAAGA CGCCGTGCAG GCCCTGTTCC AGCGCCTGTT CTACAACCCC
GACACCTACG ACCTGTCGCG CGTGGGCCGG ATGAAGTTCA ACGCCAAGGT CGGCCGCGAT
GGCGCCACCG GCCCCATGGT GCTGTCCAAC GAGGACATCC TGGCCGTGGT CAAGATCCTG
GTGGATCTGC GCAACGGCAA GGGTGAAGTC GACGATATCG ACCACCTGGG CAACCGCCGC
GTGCGTTGCG TGGGCGAACT GGCCGAAAAC CAGTACCGCA CCGGCCTGGC ACGTATCGAG
AAGGCCGTGA AGGAGCGTCT GGGCCAGGCC GAGCAAGAGC CGCTGATGCC CCATGACCTG
ATCAACAGCA AGCCGATTTC GGCCGCCCTG AAGGAATTCT TCGGTGCGTC GCAGCTGTCG
CAGTTCATGG ACCAGACCAA CCCTCTGGCC GAAATCACGC ACAAGCGTCG CGTCTCGGCC
CTGGGCCCGG GCGGTCTGAC CCGCGAGCGT GCAGGCTTCG AAGTGCGCGA CGTGCACGTG
ACCCACTACG GCCGCGTCTG CCCTATCGAA ACGCCTGAAG GCCCGAACAT CGGCCTGATC
AACTCGCTGG CCCTGTACGC CCGCCTGAAC GAGTACGGCT TCATCGAGAC GCCGTACCGC
CGGGTGGCCG ACGGCAAGGT CACGATGGAG ATCGACTACC TGTCGGCCAT CGAGGAAGGC
AAGTACATCA TCGCCCAGGC CAACGCCGAG CTGGATGCCG AAGGCCGCCT GATCGGCGAC
CTGGTGTCGG CGCGCGAAAA GGGTGATTCG ACCCTGGTGT CTGCCGAGCG CGTTCAGTAC
ATGGACGTGT CGCCCGCACA GATCGTGTCG GTGGCTGCCT CGCTGATTCC GTTCCTGGAA
CACGATGACG CGAACCGCGC ATTGATGGGC GCCAACATGT CGCGTCAGGC CGTGCCTGTG
CTGCGTCCCG AAAAGCCCAT GGTGGGCACG GGCATCGAGC GCGTGGCGGC AGTGGACTCC
GGCACCGTGG TGACGGCAAC CCGCGGCGGT ATCGTGGACT ATGTCGATGC AACGCGCATC
GTGGTCCGCG TGAACGATGC GGAAGCCGTG GCCGGCGAAG TCGGCGTGGA CATCTACAAC
CTCATCAAGT ACCAGCGTTC CAACCAGAAC ACCAACATCC ACCAGCGTCC CATCGTCAAG
CGTGGCGACA AGCTGGCCAA GGGTGACGTG GTGGCCGACG GCGCATCGAC CGACCTGGGC
GAAATCGCCA TCGGTCAGAA CATGCTGATC GCCTTCATGC CCTGGAACGG CTACAACTTC
GAGGATTCGA TCCTGATCAA CGAGCGCGTG GTGGCCGAAG ACCGCTACAC CTCGATCCAC
ATCGAAGAAC TCGTGGTGAT GGCCCGCGAC ACCAAGCTCG GTGCCGAGGA AATCACGCGC
GACATCCCGA ACCTGTCCGA GCAGCAGCTC AACCGTCTGG ACGAGTCCGG CATCATCTAC
GTGGGTGCGG AAGTGCAGCC CGGCGATGTG CTGGTCGGCA AGGTCACGCC CAAGGGCGAG
ACCACGCTGA CGCCTGAAGA GAAGCTGCTG CGCGCCATCT TCGGCGAGAA GGCTTCCGAC
GTGAAGGACA CCTCGCTGCG CGTGGACCAG GGCTCGCAAG GCACCGTGAT CGACGTGCAG
GTCTTCACCC GTGAAGGCAT CCAGCGTGAC AAGCGCGCCC AGCAGATCAT CGACGATGAA
CTCAAGCGCT ACCGCCTGGA CCTGAACGAC CAGCTGCGCA TCGTCGAGGC CGACGCCTTC
GACCGTATCG AAAAGCTGCT CAATGGCCGC GTGGCCAACG GCGGCCCGCA GAAGCTGGCC
AAGGGCGCCA AGATCGACAA GGCCTACCTG GATGGCGTGG AGAAGTTCCA CTGGTTCGAC
ATCCGTCCTG CAGAGGACGA AGTCGCCACC CAGCTCGAGT CCATCAAGAA CTCGCTGGAG
CAGACGCGCC ACAGCTTCGA CCTGGCTTTT GAAGAAAAGC GCAAGAAGCT CACCCAGGGC
GACGAGCTGC CCGCTGGCGT GCTCAAGATG GTCAAGGTCT ACCTGGCCGT CAAGCGCCGC
CTGCAACCCG GCGACAAGAT GGCCGGCCGC CACGGCAACA AGGGTGTGGT TTCCAAGATC
GTTCCGGTCG AGGACATGCC CTACATGGCC GACGGCTCCA CTGCCGACAT CGTGCTGAAC
CCGCTGGGCG TGCCTTCGCG TATGAACATC GGCCAGGTGC TGGAAGTGCA TCTGGGCTGG
GCCGGCAAGG GCCTGGGCCA GCGCATCGGC GACATGCTGC AGCAGGAAGC CCGCGCCGCC
GAGATCCGCA CCTTCATGGA AGAGATCTAC AACTCGCGCG GCCGCAAGGA AGACCTGACG
CAGCTCGACG ACAAGGAGAT CGTGTCCATG GCGCAGGCGC TGACCACGGG CGTGCCGTTT
GCCACGCCGG TGTTCGATGG TGCGTCCGAG CAGGAAATCC AGGACATGCT GCATCTGGCA
TATCCGGAGG AGCTGGCCCA GCGCAAGGGG CTGACCGAGT CGCGCACGCA GGCCTACCTG
TATGACGGCC GCACCGGTGA CCGCTTCGAG CGTCCGACCA CCATCGGCTA CATGCACTAC
CTGAAGCTGC ACCACTTGGT CGACGACAAG ATGCACGCCC GCTCCACGGG TCCGTACTCT
CTGGTGACGC AGCAGCCGCT GGGCGGCAAG GCCCAGTTCG GTGGCCAGCG TTTCGGGGAA
ATGGAAGTGT GGGCGCTGGA AGCTTACGGC GCCGCCTATG TGCTGCAGGA AATGCTGACC
GTGAAGTCCG ACGACGTGGT GGGCCGTACC AAGGTGTACG AATCCATCGT CAAGGGCGAG
CACGCCATCG AGGCAGGCAT GCCCGAGTCG TTCAACGTGC TGGTCAAGGA AATCCGCTCC
CTGGGCCTCG ACATCGAGCT TGAGCGTTCT TAA
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| Protein sequence | MAYSYTERKR IRKSFGSRDS VLEVPYLLQM QKDAYTAFLQ SDVAPKKRTI EGLQAAFNSA
FPIVSHNGFV EMKFVEYNLA KPAFDVRECQ TRGLTFASAV RAKVQLIIYD RESSTSQSKV
VKEVKEQEVY MGEVPLMTEK GSFIINGTER VIVSQLHRSP GVFFEHDKGK THSSGKLLFS
ARIIPYRGSW LDFEFDPKDL LFFRVDRRRK MPVSILLKAI GLTPESILAN FFVNDNFRLM
DSGAQMEFVS ERLRGEVARF DITDKSGKVV VAKDKRVTAR HTRELEQSGT KFISVPEDFL
IGRVVAKNIV DPDTGEIIAK ANEELTESLL KKLRSAGIQD LQCIYTNELD QGAYISQTLR
TDETVDEFAA RVAIYRMMRP GEPPTEDAVQ ALFQRLFYNP DTYDLSRVGR MKFNAKVGRD
GATGPMVLSN EDILAVVKIL VDLRNGKGEV DDIDHLGNRR VRCVGELAEN QYRTGLARIE
KAVKERLGQA EQEPLMPHDL INSKPISAAL KEFFGASQLS QFMDQTNPLA EITHKRRVSA
LGPGGLTRER AGFEVRDVHV THYGRVCPIE TPEGPNIGLI NSLALYARLN EYGFIETPYR
RVADGKVTME IDYLSAIEEG KYIIAQANAE LDAEGRLIGD LVSAREKGDS TLVSAERVQY
MDVSPAQIVS VAASLIPFLE HDDANRALMG ANMSRQAVPV LRPEKPMVGT GIERVAAVDS
GTVVTATRGG IVDYVDATRI VVRVNDAEAV AGEVGVDIYN LIKYQRSNQN TNIHQRPIVK
RGDKLAKGDV VADGASTDLG EIAIGQNMLI AFMPWNGYNF EDSILINERV VAEDRYTSIH
IEELVVMARD TKLGAEEITR DIPNLSEQQL NRLDESGIIY VGAEVQPGDV LVGKVTPKGE
TTLTPEEKLL RAIFGEKASD VKDTSLRVDQ GSQGTVIDVQ VFTREGIQRD KRAQQIIDDE
LKRYRLDLND QLRIVEADAF DRIEKLLNGR VANGGPQKLA KGAKIDKAYL DGVEKFHWFD
IRPAEDEVAT QLESIKNSLE QTRHSFDLAF EEKRKKLTQG DELPAGVLKM VKVYLAVKRR
LQPGDKMAGR HGNKGVVSKI VPVEDMPYMA DGSTADIVLN PLGVPSRMNI GQVLEVHLGW
AGKGLGQRIG DMLQQEARAA EIRTFMEEIY NSRGRKEDLT QLDDKEIVSM AQALTTGVPF
ATPVFDGASE QEIQDMLHLA YPEELAQRKG LTESRTQAYL YDGRTGDRFE RPTTIGYMHY
LKLHHLVDDK MHARSTGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYVLQEMLT
VKSDDVVGRT KVYESIVKGE HAIEAGMPES FNVLVKEIRS LGLDIELERS
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