| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_0054 |
|---|
| Symbol | |
|---|
| ID | 8389357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 57221 |
|---|
| End bp | 58279 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644978102 |
|---|
| Product | photosystem II D2 protein (photosystem q(a) protein) |
|---|
| Protein accession | YP_003135861 |
|---|
| Protein GI | 257057973 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01151] photosystem II, DI subunit (also called Q(B))
[TIGR01152] Photosystem II, DII subunit (also called Q(A)) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000310792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTG CAGTTGGACG TGCCCCGGCA CAAAGAGGAT GGTTTGATGT CCTCGATGAC
TGGTTAAAAC GCGATCGCTT TGTATTCGTT GGTTGGTCAG GTTTATTACT CTTCCCCTGT
GCCTACTTGG CTTTAGGCGG ATGGTTAACC GGAACCACCT TTGTTACCTC CTGGTACACC
CACGGTTTGG CTAGTTCCTA CCTCGAAGGC TGTAACTTCC TCACCGTTGC CGTCTCTTCC
CCCGCTAACG CCTTCGGTCA CTCCCTTCTC TTCCTGTGGG GACCCGAAGC GCAAGGCGAC
TTCACCCGTT GGTGTCAAAT TGGCGGACTT TGGACTTTTA CCGCCCTTCA CGGTGCTTTT
GGACTGATCG GCTTCATGCT GCGTCAGTTT GAAATTGCTC GTCTGGTTGG TATTCGTCCC
TACAACGCCA TCGCCTTCTC TGCTCCCATC GCCGTGTTCG TCAGTGTTTT CCTGATGTAC
CCCTTGGGAC AGTCTGGCTG GTTCTTCGGA CCTAGCTTTG GAGTGGCGGG AATTTTCCGC
TTTATCCTGT TCTTACAAGG GTTCCACAAC TGGACACTTA ACCCCTTCCA CATGATGGGA
GTAGCGGGTG TTCTCGGTGG TGCGTTACTC TGTGCTATCC ACGGGGCAAC CGTAGAAAAC
ACCCTGTTTG AAGATAGCGA TCAAGCTAAC ACCTTCCGCG CTTTTGAACC TACCCAAGCT
GAAGAAACCT ACTCCATGGT AACGGCGAAC CGTTTCTGGT CACAGATCTT CGGGATTGCT
TTTTCCAACA AACGTTGGTT ACACTTCTTT ATGCTGTTCG TCCCTGTGAC TGGACTGTGG
ATGAGTGCGA TCGGTATTGT GGGTTTAGCC CTCAACCTCC GCGCTTACGA CTTCGTATCG
CAAGAATTAC GCGCTGCTGA AGACCCTGAA TTTGAAACCT TCTACACCAA GAATATCTTG
TTAAACGAAG GTTTACGCGC TTGGATGGCT CCCCAAGACC AACCCCACCA GAACTTTGTA
TTCCCTGAGG AGGTACTCCC CCGTGGTAAC GCTCTCTAA
|
|---|
| Protein sequence | MTIAVGRAPA QRGWFDVLDD WLKRDRFVFV GWSGLLLFPC AYLALGGWLT GTTFVTSWYT
HGLASSYLEG CNFLTVAVSS PANAFGHSLL FLWGPEAQGD FTRWCQIGGL WTFTALHGAF
GLIGFMLRQF EIARLVGIRP YNAIAFSAPI AVFVSVFLMY PLGQSGWFFG PSFGVAGIFR
FILFLQGFHN WTLNPFHMMG VAGVLGGALL CAIHGATVEN TLFEDSDQAN TFRAFEPTQA
EETYSMVTAN RFWSQIFGIA FSNKRWLHFF MLFVPVTGLW MSAIGIVGLA LNLRAYDFVS
QELRAAEDPE FETFYTKNIL LNEGLRAWMA PQDQPHQNFV FPEEVLPRGN AL
|
|---|
| |