| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2755 |
|---|
| Symbol | |
|---|
| ID | 8358916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 3381245 |
|---|
| End bp | 3382615 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964935 |
|---|
| Product | putative transcriptional regulator, GntR family |
|---|
| Protein accession | YP_003122435 |
|---|
| Protein GI | 256421782 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.243959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCAGGTA CGGCATTACC AAGTACGCGT ACACTGGCAC TTGATCTGGG GCTACACCGG
AAAACGATTG TGGCAGCTTA TGAAACCCTG GTTTCGGGCA ACTGGGTGGA TAATCTGCCA
CGCAAAGGCT TCATCGTATC ACCTAATTTA CCGGTCCTAA GGCCACAGTC TTACCATAAT
GGCCGGATCG GCGCATATGA TGCAGATCCC GGATTTGAAT ATGAACAATC TGACAGCTTT
CCTTATCCCT TATCGTTACC GGCTAAAGAC GGGATCATCA TTGATGATGG ATTTCCTGAT
ATAACATTGC TTCCCAGTCA GGTGATGCTA AAAGAATATA GACATGCATT GGATCATTCC
GTGTTGAAGA AAATAAGCGC AGGCTGGGAC ATCGAAGGAT CTTCAGATTG CAGACATGCG
CTGTGCGACT TTTTGAACCA GACGCGGGGA ATAGATATCA AAACCGACAA TCTGCTGATT
ACAAGAGGCG CCCAGATGGC GATCTACATA GCGGCGGCCC TGATCATTAA ACCAGGGGAT
AAAGTGATCG TTTGTGAACC CAGCTATATC TTCGCTAATA TGGTCTTTGA GCAACTGGGG
GCGGAATTAA TCCGGGTGCC GGTTGACGGT GAAGGCATGA ATACAGAAAG CGTGGAAGAG
ATACTGAAAA CGCAGCGGGT CAGACTAATT TATATTATTC CACATCATCA TCATCCGACT
ACCGTCACCA TGAGCGTAGC ACGGCGACAT CATTTACTCC GGTTGATCAG ACACTACCAG
CTCGCCGTCA TTGAAGACGA CTATGATTAT GACTTCCAGT TTCAGTATGA ACCTTATCTG
CCACTGGCCA GTGGCGATCA TGAGGGCAAC ATTATATATA TAGGATCATT GACCAAAGTC
TTAGGCGCCC CTTTCCGTCT GGGCTATATG GTCGCTCCGG AAAAATTCAT CCACGCTGCC
GCTACCAGGC GAATGCTAAT CAATTTGAGA GGAGATATCT TCACAGAGCA GGTCGTTTCG
AATCTGATTA GGGGCGGTGA ATTGACACGT TTAATACAGA AAGCCAATAA GGTATATCGT
CAGCGCTGCC ATTTCTTAGC AGATCTGTTA GATACAGAAC TGGGCGACGT GCTAAAATTA
ACACGACCTA ACGGAGGTAT GGCACTCTGG CTGCGCTTCA ACCCTGATCT TCAACTGACC
AAAATACTTG AAAAAGCTGC TGGCAGGGGT CTCAGGATAA TGGGGAGTAT TTACGCCAAG
GGGAATAACG CAACATATAA TGCCCTTCGG TTTGGCTTTG CCTCACTCAA TGAAGCCGGG
TTAAGCAAAG CCGTAAATAT CCTTAAAACA TCTATCCACA AACCGAAATA A
|
|---|
| Protein sequence | MPGTALPSTR TLALDLGLHR KTIVAAYETL VSGNWVDNLP RKGFIVSPNL PVLRPQSYHN
GRIGAYDADP GFEYEQSDSF PYPLSLPAKD GIIIDDGFPD ITLLPSQVML KEYRHALDHS
VLKKISAGWD IEGSSDCRHA LCDFLNQTRG IDIKTDNLLI TRGAQMAIYI AAALIIKPGD
KVIVCEPSYI FANMVFEQLG AELIRVPVDG EGMNTESVEE ILKTQRVRLI YIIPHHHHPT
TVTMSVARRH HLLRLIRHYQ LAVIEDDYDY DFQFQYEPYL PLASGDHEGN IIYIGSLTKV
LGAPFRLGYM VAPEKFIHAA ATRRMLINLR GDIFTEQVVS NLIRGGELTR LIQKANKVYR
QRCHFLADLL DTELGDVLKL TRPNGGMALW LRFNPDLQLT KILEKAAGRG LRIMGSIYAK
GNNATYNALR FGFASLNEAG LSKAVNILKT SIHKPK
|
|---|
| |