Gene Cphy_1928 details

Gene Information

• Locus tag: Cphy_1928
• ID: 5744607
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 2380934
• End bp: 2381605
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 641293024
• Product: TrkA domain-containing protein
• Protein accession: YP_001559035
• Protein GI: 160880067
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0569] K+ transport systems, NAD-binding component

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGTA ATCGTTCATC AATTGAGTTT GGTATTATTG GATTGGGTAG ATTTGGATAT 
GCTTTAGCTG AGACTTTAGC AAGTGCTGGT AAAGAGGTAA TGGTAATTGA CAATAATGAA 
GATACCATTA AACAAATACG TGGAATAGTT CAAGAAGCTT TTGTTGCTGG AGCTTTAACA 
CAAGAAGTAC TAGAAGAGAC AGGAATTCAA AATTGTGAGA CTGTTGTTGT CTGTATTGGT 
GAAAAAGTTG ATACCAGTAT ATTAACCACA CTTCATGTAA TTAACATGGG TGTACCACGT 
GTAATAGCAA AGGCATTTAG TTCAGATCAA GGTAAAGTAT TAGAAAAGTT AGGTGCAGAG 
GTTATCTATC CAGAGAGGGA TATGGCAATT CGTCTTGCAA ATCGTTTGGT ATATTCCAAA 
GCACTAGATT TTATTGAATT GAATGGTGAC ATCACAGTAT CAGAGATACA AGTTACTGAG 
AAACTTATTG GAAAAACAAT CACCGATATC GATGTTCGTA AAAACTTTAA TCTTAACATT 
ATCGCATTAG AGCATGGTAA TATCACTACG ATAGAGGTGT CTCCAGATAC TGATTTAAAA 
GAAGGAGATG CTATTGTAGT TATCGGAAGA AAAGATCAAA TAGCTAAATT TGAAGCGCAT 
ATTGCTTATT AA 

 

Protein sequence

MKSNRSSIEF GIIGLGRFGY ALAETLASAG KEVMVIDNNE DTIKQIRGIV QEAFVAGALT 
QEVLEETGIQ NCETVVVCIG EKVDTSILTT LHVINMGVPR VIAKAFSSDQ GKVLEKLGAE 
VIYPERDMAI RLANRLVYSK ALDFIELNGD ITVSEIQVTE KLIGKTITDI DVRKNFNLNI 
IALEHGNITT IEVSPDTDLK EGDAIVVIGR KDQIAKFEAH IAY