| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_2461 |
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| Symbol | |
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| ID | 6354731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | - |
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| Start bp | 2694087 |
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| End bp | 2698298 |
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| Gene Length | 4212 bp |
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| Protein Length | 1403 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642670050 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_001944460 |
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| Protein GI | 189347931 |
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| COG category | [S] Function unknown
[V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
[COG2852] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGCA ACCCCTACAC CGAAGACCAG CTTGTCGAGC AGCCCGCTAT CGGGTTGTTT
GCGGAGCTTG GCTGGGCAAC GGTGTCGGCG TTGGATGAGA CATTCGGCGT TGCCGAACCC
TCACCCGGCC ACTTTGGCCA CTCTCTCCCG GAGGACGAGG GTAATGGAAA TTCCCGGATA
TCATTAGGGC GGGAGACGAA GGGGGATGTG GTGCTGGCGT CACGGTTGGG TGTGGCGTTG
GTGCGCTTGA ACCCTTTGCT GCCGCCCGAG GCAATCACCG CCGCAATGGA TGAATTGACT
CGCGACCGTT CAGCCATGCT CCTGGAGGCA GCGAATCGCG AAGTCTATCT GCTGCTCAAG
GAGGGGATTC GCGTCAGCGT TGCTGACACC GAACCCTCAC CCGGTTTCCC TCTCCCGGAG
GGCGAGGGTG CAGAAGCACC TCCATCTACC TTTGGGAGAA GGGCAGGAAA TAACGATTCG
CTACAGAAAT ATGGAGGGCA GAAGATTGTC CGTGTGAGAG TTGTTGATTG GGAGCATCCG
GAGAACAACG ATTTTCTGCT GGTGAGCCAG TTCAGCGTTA CAGGACAGCT CTACACCTGC
CGCCCTGATC TGGTCGGGTT CGTGAACGGG CTGCCGATGG TGGTGATCGA GCTGAAAAAG
CCCGGTGTGC CTGCCCGGAC GGCTTTCGAC GAGAATCTCA GGCACTACAA GGAGCAGATT
CCTTCGCTTT TCTGGTATAA TGCGCTGCTT ATCGCTTCGA ACGGTACGGA AAGCCGTGTC
GGTTCGCTCA CTGCGGATTG GGAACGGTTT TTCGAGTGGA AGCGCATCGC GCGGGAAAAC
GAGCCCCGCA GGGTGTCGCT GGAGGTGATG CTTCGCGGCA CGTGCGACCG CAGTCGTTTT
CTCGACCTCG TTGAGAACTT TACGCTTTTT TCGGAGCATA AGGCGGGATT TGCAACTCCC
GCCACCCTCA CCCCAACCCC TCTCCCAGGG GTAGAGGGGC GGAGTAAAAG CGGGCTGGTG
AAGATTATCG GGCAGAATCA CCAGTTTCTC GGGGTCAATG CGGCAATTGC GTCTTTACTC
AGGATTCGTA AAGAATATGC AGTTGCCGCC ACCCTCACCC CAACCCCTCT CCCAGAGGTA
GAGGGGCAAT ATCGTGGCGG TTTTTATTAT TCGGGACTCG TTGAACGCGC GAGGGAATTA
CGGCAGCAGC AGACACCGGC AGAGGATATC GTATGGGAGC TTTTGCGTGA CCATCGGTTC
GAGGGGCTGA AGTTTCGTCG TCAACACCAG ATCGGAAATT ATATTGCAGA TTTCTTTTGT
TCAGAGCATA AACTTGTTGT CGAAGTTGAT GGTGACGTTC ATCGTTCGCC GGAGGTGGTT
GCGAAGGATT CACAGCGGGA TGCATATTTG CGTTCTCTTG GTTATACCGT TATTCGGTTT
GGGAATCAGT TGGTATTGAA TAACCCTGCA GAGTTTCTGA ATCAAATCAG GGCGGCATTG
CAGCTCCCCT CTACCACTGG GAGAGGGGCT GGGGGTGAGG GGAACACACC AGGATCGAAT
GGGATTGGTG AATCATTGAC GCACCCCTCT ACCGCTGGGA GAGGGGCCGG GGGTGAGGGG
AACACACCAG GACCGAAAGT GATTGGTGCA GCATTGACTT ACCCCTCTAC CACTGGGAGA
GGGGCCGGGG GTGAGGGGAA CACACCAAGA CCGAAAGTGA TTGGTGCAGC ATTGACTTAC
CCCTCTACCA CTGGGAGAGG GGCTGGGGGT GAGGGGAACA CACCAAGACC GAATGGGATT
GGTGTGTTCT GGCAGACGCA GGGCAGCGGC AAGAGTTTTT CGATGGTCTT TTTTGCCCAA
AAGGTGCTTC GAAAGGTTGC GGGCAACTGG ACCTTCGTGG TGGTGACCGA CCGTATTGAG
CTTGACGAGC AGATAGCAAA AACCTTCAAG GCTGCCGGTG CAGTAAGCAA GGCCGAAGGC
GATGCATGCC ACGCTTCGAG CGGCGATCAT CTCCGGCAAC TGCTGCGGGG CAATCACCGC
TACGTCTTTA CGCTGATCCA TAAGTTTCGT TCCGAAACAC CCTCACCCCG TCCCTCTCCC
AAAGGTAGAG GGGGGGAAGA AGTATGTTCC GAAATACCCT CACTCGGGTT CTCTCCCACA
GGTAGAGGGG GGGAGGGAAT CTGTTCCGAA ACACCGGGTG CGGGTAACAA TGGAATTATG
CCAGTGCTGA GTGACAGGGC GGATATTATT GTTTTGACAG ACGAGGCGCA CCGCAGCCAG
TACGACACGC TGGCGCTGAA TATGCGTTCG GCTCTTCCCA ATGCCATGTT TCTCGCCTTT
ACCGGTACAC CGCTCATTGC CGGAGAGGAG CGCACCAAAG AGGTTTTCGG CGATTACGTA
TCCATTTACG ACTTCCAGCA GTCCGTCGAG GACGGAGCTA CGGTTCCGCT TTTCTACGAG
AACCGTACGC CCGAGCTGCA ACTGGTCAAT CCCGACCTGA ACGACGATAT CTACCGGCTT
ATCGAGGATG CCGAACTCGA TCCCGATCAG GAATCGAAGC TTGAGCGGGA GCTGAACCGA
CAGTATCATT TGCTGACGCG CGACGACCGG CTTGATACCG TTGCAAAGGA CATCGTGCGG
CATTTTCTCG GACGGGGGTT CATCGGCAAG GCGATGATGG TCTCTATCGA CAAGGCCACC
GCAATCAGGA TGTACGACAA GGTGCAACGG TTCTGGATGG AAGAGACGGG GCTTGTCCGG
CAGCAGCTTG TCCGTTATGA TCTTTCGTCT GAAAGAAAAG GGGAACTGCA GAAGCGGCTT
CAGGTGCTTG AGAGCACCGA CATGGCCGTG ATCGTTTCTC CCGGCCAGAA CGAAATCGGG
CAGATGCAGC AGATCGGCCT CGATATTGTG AAGCACCGCA AGCGCATGGT CGAGTCGCAG
CCGGCTCTGG ATGAGAAGTT CAAGGACAGC GACGATACGC TGAGAATCGT ATTTGTTTGC
GCCATGTGGC TGACCGGTTT TGACGCGCCG AGCTGTTCGA CGGTCTATCT CGACAAACCT
ATGCGCAACC ATACGCTCAT GCAGACTATA GCGCGGGCAA ACCGCGTTTT TCCCGGCAAG
CACAGCGGCA TGATTGTGGA TTACGCGAAT GTGTTCGCCT CGCTTGAAAA GGCGCTTGCT
ATCTACGGTG CAGGGAAGGG CGGTCATAAT CCGGTGAGGG GGAAAGATGC GCTTGTAGAA
GAATTACGCA AGGCGGTCGA GCTGGCAACA GCCTTCTGCA TGGAACATGG GGTGCATCTT
GCCGGAATCG AAGAGGCGGC TTCAGGTATG GAACGGCTGC AGCGTATCGA GGATGCGGTA
AACGCCCTGA TTGGGGATAC CCTGCGGCGG GAGTTTTTCG GCCATGAACG TCTTGTCCGT
ACGCTCTACC AGGCGGTAAA ACCCGATCCA GCTGCGATTG CTTTTTCGGA GCGGGTGGCG
TGTATTGCGG CAATTGCTGA AGCGATACGG GGGAAGCTGA ATCCCGTTGC GCCGGATATT
TCCACAATCA TGCAGGGAAT CGGCAGATTG CTTGACGAAT CCATTACCGG TCATGCTATC
CGCGAGTCAG GGCCGCCGGT GCTCGATCTC TCGAAAATCA ATTTCAAGGC GCTCTCTGAT
CGGTTCAGGC AATCGAAGCA CAGGAACACC GATCTGGAAA TGCTCAAGGC CGCGATTAAC
GCCAAGCTGG AAAACATGAT TCGCCTCAAT CGCACAAGGG CGGATTTTGC CGGGAAGTTC
GAAGAATTGA TTGCGGGCTA CAATGCGGGC AGTCGAAGCA TCGAAGATCT CTTTGACGAA
CTCCTCAAGC TGTCGCTCAG CCTGAGCGAT GAGGAGCAGC GCCATGTTCG GGAAAATATG
AACGAAGAGG AGCTGGTTAT TTTCGACATC CTCACCCGTC CGGCACCGGA ACTCAATACC
GATGAACGCA GCGAAGTGAA AAGGGTTGCC CGCGAACTGC TTGTCAAGAT CAAGGGTCTT
CTGGTGCTGA ACTGGCGGCA AAAAACAGAG GCACGTTCCA GGCTGAAGCT CACCATCGAG
GATGCCCTCG ACCAGGGCCT TCCCCGAGCC TATACGCCGG AAATCTACCG GCAGAAATGC
TCCGCCGTAT TCGAACATGT CTACGAATCC TATCCCGAAC GCGATGCGGG GGTTTACGCC
GAGGTTGAGT GA
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| Protein sequence | MTSNPYTEDQ LVEQPAIGLF AELGWATVSA LDETFGVAEP SPGHFGHSLP EDEGNGNSRI
SLGRETKGDV VLASRLGVAL VRLNPLLPPE AITAAMDELT RDRSAMLLEA ANREVYLLLK
EGIRVSVADT EPSPGFPLPE GEGAEAPPST FGRRAGNNDS LQKYGGQKIV RVRVVDWEHP
ENNDFLLVSQ FSVTGQLYTC RPDLVGFVNG LPMVVIELKK PGVPARTAFD ENLRHYKEQI
PSLFWYNALL IASNGTESRV GSLTADWERF FEWKRIAREN EPRRVSLEVM LRGTCDRSRF
LDLVENFTLF SEHKAGFATP ATLTPTPLPG VEGRSKSGLV KIIGQNHQFL GVNAAIASLL
RIRKEYAVAA TLTPTPLPEV EGQYRGGFYY SGLVERAREL RQQQTPAEDI VWELLRDHRF
EGLKFRRQHQ IGNYIADFFC SEHKLVVEVD GDVHRSPEVV AKDSQRDAYL RSLGYTVIRF
GNQLVLNNPA EFLNQIRAAL QLPSTTGRGA GGEGNTPGSN GIGESLTHPS TAGRGAGGEG
NTPGPKVIGA ALTYPSTTGR GAGGEGNTPR PKVIGAALTY PSTTGRGAGG EGNTPRPNGI
GVFWQTQGSG KSFSMVFFAQ KVLRKVAGNW TFVVVTDRIE LDEQIAKTFK AAGAVSKAEG
DACHASSGDH LRQLLRGNHR YVFTLIHKFR SETPSPRPSP KGRGGEEVCS EIPSLGFSPT
GRGGEGICSE TPGAGNNGIM PVLSDRADII VLTDEAHRSQ YDTLALNMRS ALPNAMFLAF
TGTPLIAGEE RTKEVFGDYV SIYDFQQSVE DGATVPLFYE NRTPELQLVN PDLNDDIYRL
IEDAELDPDQ ESKLERELNR QYHLLTRDDR LDTVAKDIVR HFLGRGFIGK AMMVSIDKAT
AIRMYDKVQR FWMEETGLVR QQLVRYDLSS ERKGELQKRL QVLESTDMAV IVSPGQNEIG
QMQQIGLDIV KHRKRMVESQ PALDEKFKDS DDTLRIVFVC AMWLTGFDAP SCSTVYLDKP
MRNHTLMQTI ARANRVFPGK HSGMIVDYAN VFASLEKALA IYGAGKGGHN PVRGKDALVE
ELRKAVELAT AFCMEHGVHL AGIEEAASGM ERLQRIEDAV NALIGDTLRR EFFGHERLVR
TLYQAVKPDP AAIAFSERVA CIAAIAEAIR GKLNPVAPDI STIMQGIGRL LDESITGHAI
RESGPPVLDL SKINFKALSD RFRQSKHRNT DLEMLKAAIN AKLENMIRLN RTRADFAGKF
EELIAGYNAG SRSIEDLFDE LLKLSLSLSD EEQRHVRENM NEEELVIFDI LTRPAPELNT
DERSEVKRVA RELLVKIKGL LVLNWRQKTE ARSRLKLTIE DALDQGLPRA YTPEIYRQKC
SAVFEHVYES YPERDAGVYA EVE
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