| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1560 |
|---|
| Symbol | cmeB |
|---|
| ID | 7411306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 1511684 |
|---|
| End bp | 1514806 |
|---|
| Gene Length | 3123 bp |
|---|
| Protein Length | 1040 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643718681 |
|---|
| Product | RND efflux system, inner membrane transporter CmeB |
|---|
| Protein accession | YP_002576111 |
|---|
| Protein GI | 222824537 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCTA AATTCTTTAT AGAAAGACCT GTATTTGCTT CTGTTGTTGC TATTATAATT
TCTTTAGCAG GTATTATAGG ACTTTATTCT TTACCTGTAG AACAATACCC TGCCCTAACT
CCTCCTGTTG TTAAAGTAAG CGCTACTTAC TCAGGTGCTG ATGCACAAAC CGTTGCACAA
ACTGTTGCTA TACCTCTTGA AGATGCGATT AATGGGGTTG AAAATATGAT TTATATGGAT
TCAACCTCAA GCTCTTCAGG TGATATGAGT TTAAGTGTTT ATTTTAATAT AGGCACAGAT
CCTGATCAAG CAACAGTTGA TGTTAATAAT AGAATTTCAG CTGCTATGGC AAAACTTCCT
GAGGATGTTA AAAAAACTGG AGTTAGCGTA AGAAAAACTG GCTCTAGTAT ATTAGCAGTT
GCAAGTTTAT ATTCTCCAGA TGGTTCTATG GATGAATTAG AAGTATACAA CTACGCCGCA
TTAAACATTT TAGATGATCT TGCAAGAGTT CCTGGTGTAG GAAATGCTGT AGCCATTGGG
TCAAGAAATT ATTCTATGAG AATTTGGCTT AATCCTGATT TATTAAACAA ATACCAAGTT
ACTGCAACCG ATGTTATTGC AGCAGTTAGG GAGCAAAATG CTCAATATGC TACTGGTAAA
ATAGGACAAG AGCCCGTGGT AGAGCGCTCT CCTTATGTGT ACTCAGTTAC TATGCAAGGT
AGATTAAAAA ATGCCAAAGA ATTTGAAAAT ATCATTTTAA GAACAAATAG TGATGGTTCT
TTTTTGAGAT TAAAAGATGT AGCTGAAGTG GGACTAGGAT CAAGAGAATA TACCTTTAAT
GGTAGATTAA ATGGAAACAA TGCTACACCT ATACTTATAT TCTTACAAAC AGGCGCAAAC
GCTGTAAATA CAGCTGAATT AGTAAAAGCT AAATTTGAAG AATTATCAAA GAGCTTTCCT
GAGGGCTTAG CTTATAAAGT TCCTTATGAC ACCACTTTGT TTATCAAAGC TTCAATCCAA
GAAGTTATAA AAACATTTTT TGAAGCATTA ATCCTTGTTG TAATAGTAAT GTATCTATTC
TTAAAAAATT TCCGCTCAAC CATCATACCT ATGATTGCTG TGCCTGTATC TGTTTTAGGA
ACATTTGCAG GTCTTTATGT CTTAGGTTTT AGTATTAATC TGCTTACACT TTTTGCTTTG
GTTTTGGCCA TTGGTATTGT GGTTGATGAT GCGATTATTG TGGTAGAAAA TATAGATAGA
ATCATACATG AAGATGAAAA CATTAGCATA AAAGATGCGG CTATACAAGC TATGGAAGAA
GTTGCTGCAC CTGTTGTTTC TATAGTGCTT GTGCTTTGTG CGGTATTTAT CCCTGTTTCT
TTTATATCAG GTTTTGTTGG AGAAATTCAA AGACAATTTG CCATAACTCT TGCGGTTTCT
GTGACAATTT CAGGCTTTGT GGCTTTAACA TTAACCCCAT CATTATGTGC AATTTTCCTA
AGAAGAAATG AAAGCAAACC TTTTTATATA GTAAAAAAAT TCAACGACAT TTTTGACTGG
TCTATAGAAG TTTTTGGAGC TGGTGTTGCT TATATGCTAA AAAGAGTTGT GCGATTTGTA
TTAGTGTTTT TTATATTTTT AATAGCCTTG TTAGGATTAT TTAAAATCGT TCCACATTCA
TTAGTTCCAA ATGAAGATCA AGGAAGCTTT CTATCGGTAG TAAACTTACC AGCAGCTTCA
TCACTAAATA GAACAACTCA AGCAATGGAT ACCCTAGCAG AACAACTTGG TAAAAATGAA
AATATTGAAA ATATAGTTGG TCTTATAGGA TATGATCTTT TCACAGGCTC TTTAAAAGAA
AATTCTGGAG CAATGTTTGT AAATTTAAAA GATTGGAGTG AAAGAAGCGT TAGTAGTTTT
GATATTACAG GAACATACAA TAAACAATAT TATTTAAATC CTAATTTTCA ATCATTTTTT
GTTAATCCTC CTCCAATTCA AGGTCTAAGT TTAACCGGTG GTTTTGAAAT GTATGCTCAA
AATCGTGGTG GTAAAAGTTA TGATGAGATT CAAGCTGATG TAAATAAATT AGTAGATGCA
GCAAACAAGC GCCCAGAACT TAGCAATGTT AGAACAACGC TAGATACTAA TTTTCCTCAG
TTAAAACTTG AAATTGACCG TGATAAAGTA AAACTTTATG GACTTAACTT AAATGATGTA
TTTAGTACAC TTAATGCTAC TATAGGGACT TATTATGTAA ATGATTTTTC TATGCTTGGA
AAAAATTACC GCGTTAATAT CAGTGCCATT GGAGATTTTA GAAATACTCA AAATGCATTA
AAAAATATTT TTGTTAGAGC AAATGATGGC TCAATGGTAG CCCTTGATAG TGTTTTAACT
CTAACAAGAA GTGTTGGACC TGATGATGTA AAACGTTTTA ATTTATTCCC ATCAGCGCTA
GTTCAAGGTG ATCCTGCACC AGGATATACC TCAGGACAAG CTATTGATGC TATCGCGCAA
GTTGCAAAAG AAACACTAGG TGAAGAATAT AGCATAGCAT GGTCAGGATC AGCTTACCAA
GAAGTTACAA GTAGTGGTGC TGGGCAAATA GCATTTGCAC TAGGGCTTTT ATTTGTATTT
TTAATTCTAG CAGCTCAATA TGAAAGATGG CTCATGCCTT TAGCTGTTAT AACAGCAGTT
CCTTTTGCTG TTTTTGGTTC TTTGCTTTTT GTATGGCTAA GAGGCATAGA CAATGACATA
TATTTCCAAA CAGGACTTTT GCTTTTAATA GGACTTTCTG CTAAAAATGC TATTTTGATT
GTTGAATTTG CTATGGAAGA ACACCTTAAA AAAGGCAAAA GCATCTTTGA TGCAGCAATT
AGCGCAGCAA AATTAAGATT TAGACCTATA GTAATGACTT CTTTAGCTTT TATTTGCGGA
ATTTTACCTT TAGTGTTTGC TTATGGAGCA GGAAGCGCAA GTCGCCATGC TATAGGAACA
GGAGTTGTAG GTGGCATGAT AGCAGCCTCA ACTGTGGCAA TATTTTTTGT GCCTTTATTC
TTTTATATTT TAGAAAGTTT CAACAAATGG CTTGATGAAA AAAGAGGTAA AAAACATGCA
TAA
|
|---|
| Protein sequence | MFSKFFIERP VFASVVAIII SLAGIIGLYS LPVEQYPALT PPVVKVSATY SGADAQTVAQ
TVAIPLEDAI NGVENMIYMD STSSSSGDMS LSVYFNIGTD PDQATVDVNN RISAAMAKLP
EDVKKTGVSV RKTGSSILAV ASLYSPDGSM DELEVYNYAA LNILDDLARV PGVGNAVAIG
SRNYSMRIWL NPDLLNKYQV TATDVIAAVR EQNAQYATGK IGQEPVVERS PYVYSVTMQG
RLKNAKEFEN IILRTNSDGS FLRLKDVAEV GLGSREYTFN GRLNGNNATP ILIFLQTGAN
AVNTAELVKA KFEELSKSFP EGLAYKVPYD TTLFIKASIQ EVIKTFFEAL ILVVIVMYLF
LKNFRSTIIP MIAVPVSVLG TFAGLYVLGF SINLLTLFAL VLAIGIVVDD AIIVVENIDR
IIHEDENISI KDAAIQAMEE VAAPVVSIVL VLCAVFIPVS FISGFVGEIQ RQFAITLAVS
VTISGFVALT LTPSLCAIFL RRNESKPFYI VKKFNDIFDW SIEVFGAGVA YMLKRVVRFV
LVFFIFLIAL LGLFKIVPHS LVPNEDQGSF LSVVNLPAAS SLNRTTQAMD TLAEQLGKNE
NIENIVGLIG YDLFTGSLKE NSGAMFVNLK DWSERSVSSF DITGTYNKQY YLNPNFQSFF
VNPPPIQGLS LTGGFEMYAQ NRGGKSYDEI QADVNKLVDA ANKRPELSNV RTTLDTNFPQ
LKLEIDRDKV KLYGLNLNDV FSTLNATIGT YYVNDFSMLG KNYRVNISAI GDFRNTQNAL
KNIFVRANDG SMVALDSVLT LTRSVGPDDV KRFNLFPSAL VQGDPAPGYT SGQAIDAIAQ
VAKETLGEEY SIAWSGSAYQ EVTSSGAGQI AFALGLLFVF LILAAQYERW LMPLAVITAV
PFAVFGSLLF VWLRGIDNDI YFQTGLLLLI GLSAKNAILI VEFAMEEHLK KGKSIFDAAI
SAAKLRFRPI VMTSLAFICG ILPLVFAYGA GSASRHAIGT GVVGGMIAAS TVAIFFVPLF
FYILESFNKW LDEKRGKKHA
|
|---|
| |