| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_2341 |
|---|
| Symbol | |
|---|
| ID | 7268691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | - |
|---|
| Start bp | 2847303 |
|---|
| End bp | 2848010 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643567170 |
|---|
| Product | primosome, DnaD subunit |
|---|
| Protein accession | YP_002463655 |
|---|
| Protein GI | 219849222 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3935] Putative primosome component and related proteins |
|---|
| TIGRFAM ID | [TIGR01446] DnaD and phage-associated domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00367055 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00187348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTTC ATGGCTTCAC AACCGAACGA CTCATCGGTA TACCGCCGGA ATTTTTCACC
GACGTCTTAC CGGCGATCAC TAAGCCGAGC GAACTCAAAG TGACGCTCCA CCTGTTCTAC
CGGCTCAGTC GGCAGCGTAG CCGGCCCCGT CGGATCAGTT GGGATGATCT GTACCGTGAC
GAACTGCTCC GTCGTTCATT ACAGGCACTC AGTTCGCTCC GTTCATTCGA GGAGCTGCTC
GAGGAAGGTT TAGCCGCAGC AGTCCGGCGT GGCACCGTCC TGCATTTTGT CGAACCACTC
GACGGGCGGG CACGCAACTG GTACCTGATC AATACCCCGG CCAATCGACA ATGGATCGAG
CGCATGGGGA CAAGTGGGAT CGTTCCACCA TTCGAGGAAC CGGCGGAACG GCCGGGCATC
ATCGAGTTGT ACGAACAAAA TATCGGACTA GTCACGCCGC TGCTGCTTGA AGAATTACGT
ACCGCCAGCG ACCGTTACCC TACGGAATGG CTTGAAGACG CCATCCGCGA AGCTGTGCGA
GCGAATGTAC GTTCGTGGCG TTATATTCAG CGCATGCTGG AGAGGTGGGC CGCCAATGGA
CGAGAAACTA CGCCGTATCA GGCCGGACGA CCTATCGATA TTGAAAAATA TACCGGCGGA
CAACTCGGAC ACCTCTTCCG CCGAGGAAGC GACGAAAGCG ACCTCTGA
|
|---|
| Protein sequence | MPFHGFTTER LIGIPPEFFT DVLPAITKPS ELKVTLHLFY RLSRQRSRPR RISWDDLYRD
ELLRRSLQAL SSLRSFEELL EEGLAAAVRR GTVLHFVEPL DGRARNWYLI NTPANRQWIE
RMGTSGIVPP FEEPAERPGI IELYEQNIGL VTPLLLEELR TASDRYPTEW LEDAIREAVR
ANVRSWRYIQ RMLERWAANG RETTPYQAGR PIDIEKYTGG QLGHLFRRGS DESDL
|
|---|
| |