Gene Cagg_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0088 
Symbol 
ID7266826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp123895 
End bp124809 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content56% 
IMG OID643564961 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002461477 
Protein GI219847044 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACTG AGTGGCGCAG CCAACTAAGC AGACAGTGGC GCAAAGAGGC GAGCGCATAC 
GGCTTCATTG CCCCGTATGC GGTGCTGTTC ACCATCTTTA TCGCGATTCC GGTGCTGGCA
GCCTTCTTGC TCTCGTTCAC CTTTTTCGAC TCGATCCAGC CGCCGCAATT CAACGGCTTA
CTCAACTATA TCGTGTTGCT GACCCAAGAC GACATCTTTA TGCGTTACGT CTTGCCCAAC
ACGATCCAGT TTGCGGTGCT GGTCGGGCCG GGGGGCTATG TGCTGGCCTT TTTGCTGGCG
TGGATGTTGG CCCAATTGCC GCGCACGCCG CGCACCATTT TCGCCCTTAT CCTCTACTCG
CCGTCGATGA CCGGCGGCGT AGCGATGGCG GTGGTCTGGC AGACGCTGTT TAGCGGCGAT
CAGAACGGCT ACCTCAACAG TTTTCTGCTC AGCTTGAACC TGATTCAAGC GCCGATCCAG
TGGCTGCAAT CGCCAGAGTA TTTGATGACG ATTATGATCA TCGTCACCTT GTGGAGCAGT
ATGGGAGTCG GCTTTTTGGC CATGCTGGCC GGCATGCTCG ACATCAATCC CGAATTATAC
GAAGCCGGCG CGCTCGATGG GGTCAGCAGT CGCTGGCAAG AGATCATCTA CATCACCATC
CCATCAATGA AGCCGCAGAT GCTGTTTGGC GCGGTAATGG CAATTGTCGG CGCGTTTCAG
GCCGGTACTA TCGGGGTTGC CCTGTCAGGT AGCAACCCGA CACCACAATA CGCCGGCCAA
CTGATTGTCA ACCATATCGA AGACTACGGC TTTCTACGCT ACGAAATGGG TTACGCCGCC
GCCGTTTCGG TGGTGCTGTT GTTGATGGTG TTGCTGTTTA ACCGGCTGGC GAACAAACTG
TTCCGCGAGG ATTGA
 
Protein sequence
MQTEWRSQLS RQWRKEASAY GFIAPYAVLF TIFIAIPVLA AFLLSFTFFD SIQPPQFNGL 
LNYIVLLTQD DIFMRYVLPN TIQFAVLVGP GGYVLAFLLA WMLAQLPRTP RTIFALILYS
PSMTGGVAMA VVWQTLFSGD QNGYLNSFLL SLNLIQAPIQ WLQSPEYLMT IMIIVTLWSS
MGVGFLAMLA GMLDINPELY EAGALDGVSS RWQEIIYITI PSMKPQMLFG AVMAIVGAFQ
AGTIGVALSG SNPTPQYAGQ LIVNHIEDYG FLRYEMGYAA AVSVVLLLMV LLFNRLANKL
FRED