Gene Caci_6600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6600 
Symbol 
ID8337964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7608621 
End bp7610093 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content67% 
IMG OID644959694 
Productamino acid permease-associated region 
Protein accessionYP_003117287 
Protein GI256395723 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTCGA TGGATGTCCC CCTTGAGGGG GCGGGCGGGA GGCGGCGCGC AGCCGTCGCG 
AAGGCGGTCG CCAAGCCGCG CCTGACGTGG CTGACGCTCG CGTTCATGAC CACCAGTTCG
GTGGCCAGCC TGCGGGCCTC GCCGACGATG GCCGTCTACG GTCTGGCCTG CATCTTCCTG
TACGTCGTGC CGGCGATCGT GTTCCTGCTG CCCACGGCGC TGGTCTCGGC CGAGTTGGCG
TCGGGCTGGG ACGGCGGGGT CTACAACTGG GTCGCCCAAG GCTTGTCGAA GCGGCTGGGC
TTCCTGGCGG TGTGGTGCCA GTTCGCGATG ACGATCTTCT ACTATCCGAC GCTGCTCGGG
TATGTCGCCA GCACCATCGC CTACGTGATC AATCCCCAGC TGGCCGACAA CGGCCTCTAC
ACCGCGATCG TCATCATGGT CGTGTACTGG TCCGGGGTGT GGATCTCCTC GCGCGGGACC
AGCGGGGTCG GCGGGATGGC CTCGTTCGGG CTGATCATCG GCACGCTGAT CCCCGGCGTA
CTGCTGGTCG TGCTGGGCAT CGTCTTCCTC GGCCAGGGCA ACCCCTCCGC CGCGCCGATG
AACGCCGGCT CCATCTTCCC GCAATGGACG GGAGTGGCGA GCCTGGTGCT GATCGTCAAC
AACTTCCTGA GCTACTCCGG CATGGAGATG AACGCGGTGC ACGTCTCCTC GCTGAAGAAC
CCGGGCAAGG AGTTCCCCAA GTCGATGTTC CTGGCGATGG GACTGGTGCT GCTGATCTTC
ATCCTGCCGG CGCTGGCGAT CAGCTGGGTG GTGCCCTCGG CGCAGCTGAG TCTCACGGCC
GGCGTGATGC AGGCGTTCGA CGCCTTCTTC CAGTACTTCA GCATCGGCTG GCTGACGCCG
CTGGTGGCGG TCGGGCTGGT GGCGGCGTCC GTCGGCGGCA TGCTGACCTG GCTGGCCGGA
CCGTCCAAAG GGCTGTTGAT GATCTCGCGC CAGGAGGGCT ACCTGCCTCC GTACCTGCAG
AAGCTCAACA AGAACGGCGT CCAGCAGAAC ATCCTGGTCG CCCAGGGCGC CGTGACCACG
CTGATCGCGC TGATGTACGC GCTGATCCCG AGCGTGTCCG GGGCGTACTG GATCTTCTCG
GTGATCACGA CGCAGGTCTA CCTGATCATG TACCTCCTGA TGTTCGTCGC GGCGATGCGC
CTGCGCAAGC TGCAGCCGGA CCATCCGCGC GGCTTCCGCG CCCCGCTGCT CGGACCCCTG
TGCGTGATGG GTCTGCTCGC CTCGGCGGCG GCGATGGTCA TCGGGTTCGT GCCCTCCTCG
CAGTTCGGCA GCGGCAGCGT CTGGTCCTAC GTGCTGATCA TCGCCGGCGG CCTGCTCCTG
CTCGGGTTCC TCATCCCGTT CGGGTTCCTC AAGGCGCGCA AACCCTCCTG GCGCCGCGCC
GATGGGGAGC CGGCAGCCGA GGGCGGTGCG TGA
 
Protein sequence
MTSMDVPLEG AGGRRRAAVA KAVAKPRLTW LTLAFMTTSS VASLRASPTM AVYGLACIFL 
YVVPAIVFLL PTALVSAELA SGWDGGVYNW VAQGLSKRLG FLAVWCQFAM TIFYYPTLLG
YVASTIAYVI NPQLADNGLY TAIVIMVVYW SGVWISSRGT SGVGGMASFG LIIGTLIPGV
LLVVLGIVFL GQGNPSAAPM NAGSIFPQWT GVASLVLIVN NFLSYSGMEM NAVHVSSLKN
PGKEFPKSMF LAMGLVLLIF ILPALAISWV VPSAQLSLTA GVMQAFDAFF QYFSIGWLTP
LVAVGLVAAS VGGMLTWLAG PSKGLLMISR QEGYLPPYLQ KLNKNGVQQN ILVAQGAVTT
LIALMYALIP SVSGAYWIFS VITTQVYLIM YLLMFVAAMR LRKLQPDHPR GFRAPLLGPL
CVMGLLASAA AMVIGFVPSS QFGSGSVWSY VLIIAGGLLL LGFLIPFGFL KARKPSWRRA
DGEPAAEGGA