Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6252 |
Symbol | |
ID | 8337615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 7190368 |
End bp | 7192581 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644959353 |
Product | Ricin B lectin |
Protein accession | YP_003116947 |
Protein GI | 256395383 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3345] Alpha-galactosidase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.189274 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACACCG CACCACTGGT ACGTCCCGGT CCACGCCGCG TCTTCGCCGT CTTCTTGGCG GCGCTGCTCG CCCTGTTCTG TGCCAACGGC AGCCAGCCGA AGGCGTACGC GCAGAGCAAC GGCGCGGCGC TCACGCCGCT CATGGGCTGG AGCAGCTGGT CCTTCCTGCG CAGCGCGCCG ACCGAGGCGA AGATGAAGGC CCAAGCCCAA TCCATGTCCA GCTCCGGGCT GGTCGCCGCG GGCTACAAGT ACGTCAACCT CGACGACTTC TACTACCTGA ACCCCGGGAC CACCGTCGAC TCCTACGGCC GCTGGGTCAT CGACACCGGC AAGTTCCCCG ACGGCATGGC GAATCTGGGC TCGTACATCC ACTCCCTCGG TGAGAAGTTC GGGATGTACC TGACCCCGGG CATCCCGGTC GCGGCGTACA AGCAGAACAC GCCGATCCAG GGGACCTCGT TCCACGCCCA GGACATCGTG TCCAACACCA GCAGCTACGC GACGAACTAC AACTTCGGCA ACGGCGCGAT GTACAACATC GACTACGCCA AGAACCCCGC CGCCGCGCAG GCGTTCCTGA ACTCCTGGGC CAACGAGCTC GCCGGCTACG GCATCGACTA CCTGAAGGTC GACGGCATCA GCCCGAACGA CGGCGACGCC CAGGGCGTGG CCGACACCCA GCACTGGTCC CAGGCGCTCA ACCAGACCGG CCGCACCATC CACCTGGAGC TGTCCAACTC GCTGACGCCC GCGGACGCCG CCTCCTGGCA GCAGTACTCC AACGGCTGGC GCATCGACGG GGACGTCGAG TGCTACTGCG GCTCGAACTC CTCCTTCCCG CTGACCGACT GGAACAACGT CAGCCAGCGT TTCACCGACG TGCAGCCGTG GATCGGCGTC GGCGGCACCG GCGGCTGGAA CGACCTGGAC TCGGTGGAGA TCGGCAACGG CTCCAACGAC GGGCTCACCC TCGACGAGCG GAAGACGCAG CTGACGCTGT GGGCGATCGA GAACTCCAAC CTCACCCTCG GCGTCGACAT GACGCACCTG GACTCCACCG ACGTCGGGCT GCTGACCAAC AGCGAAGTGC TCGCCGTGGA CCAGGCCGGA CACCCGGCGC GCGCGGTCGA CCGCACGACG CCGCTGCAGA CCTGGTACGC CGCGAACGGC GACGGCAGCT ACACCGTGGC TCTGTTCAAC CTGTCGGGCT CGGCTGCCAC GGTCACGGCG AACTGGAAGG ACATCGGGTT CACCGGCTCC TCGGCGACGG TGCACGACGA CTGGTCGCAC AGCAACCTGG GCACGTTCGC GACGAGCTAC GGCGTTTCAC TGCCTGCGCA CGGCACGACG CTGCTCAAGG TGGTCCCGAC CGGCGCGGCG AGCTACAACG CGATTTCCTA CAACATAGTC AACGCGAACA GCAGCATGAA CCTGGCCACC TCGGGCTCCT CGATCGTGCA GCAGAGCCCT GACAACGCCC TCGACCAGGA GTGGCAGCTG GTCCCGGTCG GCGACGGCAG CTACAAGGTC CTCAACCGCA CCAGCCACCA GCAGCTGGCC GTTCCCTCAA CCACTCAGGG TGCACAGCTC ACGCAGAAGG CCAACGACAA CGCCGCCGAC TCGCAATGGC GCTTCGTCCC GACCGGCAGC GGCTCGTACA CGCTGAAGTC CTCCTCCGAC GGACAGGTCG CCGACGTGTC CGGCGCCTCG ACGAGCGCCG GGGCGTCGGT GATCCAGTGG CCCGCCAACA ACGGCGCGAA CCAGAAGTGG ACGCTGGTCC CGGTCCCGGA CGCGAACCAG GGCTACCGGG TCGAGAACCT GCTGACCGGC GGCCGGCTGG ACGTGAACGG CGACTCCACC GCCGACAGCG CGACACTGGT GCAGTGGTCT GACAACGGCC AGGCCGACCA GCGCTGGACC TTCGCCAAGC AGAGCGGCGG CGCGTACACG ATCGTCAACG CCAACAGCGG CAAGCTGGTC AACATCCCGG GCCCGACCAC CGCGACGGCG ACGCAGCTGA TCCAGTTCTC CGACGACGGG AACAGCAACT CCCGCTGGAC GCTGGTCGAC GAAGGACCGG GCGTCGTCGG GCTGAGGAGC GTCTACGACG GACAGATGAT CGACGTCTCC AACGGCAGCA CCAACACCGG TACGGCGGTG ATTCAGTTCA CTGCGAACGG CGGGCAGAAC CAGGACTGGA CACTGGTGCC GTGA
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Protein sequence | MHTAPLVRPG PRRVFAVFLA ALLALFCANG SQPKAYAQSN GAALTPLMGW SSWSFLRSAP TEAKMKAQAQ SMSSSGLVAA GYKYVNLDDF YYLNPGTTVD SYGRWVIDTG KFPDGMANLG SYIHSLGEKF GMYLTPGIPV AAYKQNTPIQ GTSFHAQDIV SNTSSYATNY NFGNGAMYNI DYAKNPAAAQ AFLNSWANEL AGYGIDYLKV DGISPNDGDA QGVADTQHWS QALNQTGRTI HLELSNSLTP ADAASWQQYS NGWRIDGDVE CYCGSNSSFP LTDWNNVSQR FTDVQPWIGV GGTGGWNDLD SVEIGNGSND GLTLDERKTQ LTLWAIENSN LTLGVDMTHL DSTDVGLLTN SEVLAVDQAG HPARAVDRTT PLQTWYAANG DGSYTVALFN LSGSAATVTA NWKDIGFTGS SATVHDDWSH SNLGTFATSY GVSLPAHGTT LLKVVPTGAA SYNAISYNIV NANSSMNLAT SGSSIVQQSP DNALDQEWQL VPVGDGSYKV LNRTSHQQLA VPSTTQGAQL TQKANDNAAD SQWRFVPTGS GSYTLKSSSD GQVADVSGAS TSAGASVIQW PANNGANQKW TLVPVPDANQ GYRVENLLTG GRLDVNGDST ADSATLVQWS DNGQADQRWT FAKQSGGAYT IVNANSGKLV NIPGPTTATA TQLIQFSDDG NSNSRWTLVD EGPGVVGLRS VYDGQMIDVS NGSTNTGTAV IQFTANGGQN QDWTLVP
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