Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0662 |
Symbol | |
ID | 8331992 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 770037 |
End bp | 771614 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644953815 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003111439 |
Protein GI | 256389875 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCACA AGCAGATCCT GGTGGTCTTC GGCTCGTTGA TGCTGGGCCT GCTCCTGGCC TCGCTGGACA ACACGATCGT CAGCACGGCG ATCCGCACGA TCATCGGTGA CATCGGCGGC CAGAACGGCC TCGCGCGCAT GCCGTGGGTG ACCACCGCCT ACGTGCTGGC GTCCACCGCC GCGACCCCGA TCTACGGCAA GCTCTCCGAC CTGTTCGGCC GCAAGCCGTT GTACATGACG GCGATCGTGC TGTTCCTGAC CGGCTCGGCA CTGTCCGGCC TGTCGCAGAA CCTGAACGAG CTCATCGCCT TCCGCGCGCT GCAGGGCCTG GGCGCCGGAG GCATCCTGGG CCTGACGTTC GCCATCGTCG GCGACGTGGT CCCGCCCCGC GAGCGCGGCA AGTACCAAGG TCTGTTCGGC GGCGTGTTCA TGCTGGCGAT GGTGGCCGGC CCGCTGCTCG GCGGCATCTT CACCGAGCAC AACTCGATCA TCGGCATCAC CGGCTGGCGC TGGGTGTTCT ACGTCAACCT GCCGATCGGC ATCATCGCGC TGTTCGTCAT CAGCGCCGTG CTGCACCTGC CCAAGCGGCG GGTGAAGGCG ACCATCGACT ACATCGGCGC GACGCTGGTC GTGGCCGGCG TGGTGTGCCT GCTGCTGGCG GCGCAGATGG GCGGCCAGCA GTACGCGTGG GGCTCCCCGG TCATCATCGG CCTGGCGATC GTCGGCGTGG TGGTCCTGGT GGGCTTCGTC TTGTGGGAGA TCCGCACGCC CGAGCCGATC CTGCCGATGC GCCTGTTCCG CGGCGACGTG TTCCGCGTCT CGAGCATCAT GGGCTTCCTC ATCGGCATGG TCATGATGGG CGCGATGATG TACATCCCGT TCTACTTCCA GGTCGTGAAC GGCGACAGCC CGACCAAGGC GGGCCTGCGG ATGCTGCCGA TGATGGTCGG CCTGCTGACC ACCTCGATCA GCTCCGGCCG TCTGATCAGC CGGACCGGCC GCTACCGGTT CTTCCCGATC GCCGGCATCG CGGTGACCAC CATCGGCCTC GGCCTGATGA CCACCATGGA CGAGAACACG ACCTTCTTCA CCGGCGCGCT GTTCATGTTC ATCGTGGGCC TCGGCCTCGG CGCGACGATG CAGGTGCTGA TCCTGGCCGT GCAGAACGCG GTGGAGATGA AGGACATGGG CGTGGCGACC ACGTCCTCGA CCTTCTTCCG CTCGCTGGGC CAGACCTTCG GCGCGGCGGT CATGGGCGCG ATCCTGACCA ACCAGCTCAC CAGCCACCTG AAGACCAACG CCGGCCCGAG CCCGGCCATG GCGCCGGTCC GCGAGCACGG CATGGCGATC CTGCAGAGCG AGGGCGCGAT GTCCAAGCTG CCGCAGCCCG TCCAGCACGT GCTGATCCAC TCCTTCACGC AGGCGCTGTC GACGGTGTTC CTGTTCGGCG CCGCGCTCAG CCTGATCGCG TGGTTCGCCA GCTGGTTCCT GAAGGAGCAC AAGCTGCGCT CGATGGCTCC CTCGGGCGCC GCGAAGCAGG GCTCCCCTGA CGTGGAGGCA CCGGCGCTGG CGCACTAG
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Protein sequence | MSHKQILVVF GSLMLGLLLA SLDNTIVSTA IRTIIGDIGG QNGLARMPWV TTAYVLASTA ATPIYGKLSD LFGRKPLYMT AIVLFLTGSA LSGLSQNLNE LIAFRALQGL GAGGILGLTF AIVGDVVPPR ERGKYQGLFG GVFMLAMVAG PLLGGIFTEH NSIIGITGWR WVFYVNLPIG IIALFVISAV LHLPKRRVKA TIDYIGATLV VAGVVCLLLA AQMGGQQYAW GSPVIIGLAI VGVVVLVGFV LWEIRTPEPI LPMRLFRGDV FRVSSIMGFL IGMVMMGAMM YIPFYFQVVN GDSPTKAGLR MLPMMVGLLT TSISSGRLIS RTGRYRFFPI AGIAVTTIGL GLMTTMDENT TFFTGALFMF IVGLGLGATM QVLILAVQNA VEMKDMGVAT TSSTFFRSLG QTFGAAVMGA ILTNQLTSHL KTNAGPSPAM APVREHGMAI LQSEGAMSKL PQPVQHVLIH SFTQALSTVF LFGAALSLIA WFASWFLKEH KLRSMAPSGA AKQGSPDVEA PALAH
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