Gene CPR_1858 details

Gene Information

• Locus tag: CPR_1858
• Symbol: infC
• ID: 4204410
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2058156
• End bp: 2058677
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 642566408
• Product: translation initiation factor IF-3
• Protein accession: YP_699172
• Protein GI: 110802686
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0290] Translation initiation factor 3 (IF-3)
• TIGRFAM ID: [TIGR00168] translation initiation factor IF-3

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000644129
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACAAGA TTAGTAAAAA TTTTGCAATC AATCAAGAAA TAAGAGAAAA AGAGGTTAGA 
TTAATTTCTA GCACAGGAGA GCAACTTGGT GTTGTATCTG GAAGAGATGC ACAAAGAATG 
GCAGATGAGG CTGAGTTAGA CTTAGTTATG ATTTCGCCAA ATGCTAAACC ACCAGTTTGC 
AAAATAATGG ATTACGGTAA ATTTATTTAC GAGCAATCTA AAAAAGAAAA AGAAGCAAAA 
AAGAAGCAAA AGGTTATCAG TGTTAAGGAG ATAAGAGTTA GCCCAACTAT AGAAAAGCAT 
GACTTAGAAA TAAAAGCTAA GAATGCTAAA AAATTCTTAG AAGCTGGAGA TAAAGTCAAA 
ATAACTGTAA GATTTAGAGG AAGAGAAGCT GAGCATTCAC ATGTTGGTGT TAAGATATTA 
GATAATTTCT TAAATCAATT AGAAGAAGTA TGTTCAGTAG AAAAACCTGC TAAATTAGAA 
GGTAGAAACA TGATAATGAT TTTAGCTCCT AAAAAAGCGT AA 

 

Protein sequence

MNKISKNFAI NQEIREKEVR LISSTGEQLG VVSGRDAQRM ADEAELDLVM ISPNAKPPVC 
KIMDYGKFIY EQSKKEKEAK KKQKVISVKE IRVSPTIEKH DLEIKAKNAK KFLEAGDKVK 
ITVRFRGREA EHSHVGVKIL DNFLNQLEEV CSVEKPAKLE GRNMIMILAP KKA