| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1224 |
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| Symbol | |
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| ID | 4206400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1375296 |
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| End bp | 1376270 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642565780 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_698546 |
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| Protein GI | 110803565 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00465403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAATAG AGATAGGTAC GAATGAAGCG GGACAGAGAT TAGATAAGTT CTTAAGAAAA
TATTTAAAGG ATGTACCTCT AAGTGCAATA TTTAAAGCCC TAAGAAAGGG TGATATAAGA
GTAAATGGAA AGAAGCAAAA AGAAAAGTAT TCTCTTTTAG ACGGAGATGT TATAGAGATA
AGATATCTTC AAAGTGTAGT AACTAAGGAG AAGAAAAAGC CTAATTTCCA AATGGTTGAT
TCAGGATCAC TTCAAGTGGT ATATGAAGAT GAAAATATGC TTTTAGTTGA GAAATGGCCA
GGAGTATTAG TTCATTCAGA TAAAAAGAAT GGAGCTCCAA CCTTAACTGA CTATGTATTA
TCATACTTAT TCAGAAAAGG AGATTATGTT CCAGAAAATG AATTAACTTT TACTCCTGCA
TCTTGTAACA GATTAGATAG AAATACTTCA GGAATAGTAT TTTTCGGTAA GAATTTTGAA
GGATTAAAAT TACTTAACGA GATGATAAGA GAAAGAAAAG TTAATAAGTA TTACTGTGCT
TTAGTAAAAG GAAAAATACA GCCTGGAAAA TATGAAGCAT ATATATCAAA AGATGATGAA
TTAAATAAGT CAACAGTTTA TGATACTGAA AGACCAGATA CAAAGAAAAT AAAAATGGAT
GTTAAGGTTC TACAAACTAA TGGTGCCTTT TCATTATTAG AAATAGAACT TATAACTGGA
AGAAGTCATC AGTTAAGAGC TCATTTAGCT CATTTAGGAA ATCCTATTGT TGGAGACTTT
AAATATGGTG ATAATAAAAT GAATTCCTTC TTTGAAAATA AGTTTGGATT AACATATCAA
TTCCTTTATG CTTATAAAGT TACATTTAAA GAGGTTCCTG AAAAGTTTGA TTACTTAAAA
AATAAAACTA TAGCTCAGGG ATTACCTCCA ATGTTTAAAA AGATAAAGAA GGATGTATTT
AAATTTAGGA TTTAG
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| Protein sequence | MKIEIGTNEA GQRLDKFLRK YLKDVPLSAI FKALRKGDIR VNGKKQKEKY SLLDGDVIEI
RYLQSVVTKE KKKPNFQMVD SGSLQVVYED ENMLLVEKWP GVLVHSDKKN GAPTLTDYVL
SYLFRKGDYV PENELTFTPA SCNRLDRNTS GIVFFGKNFE GLKLLNEMIR ERKVNKYYCA
LVKGKIQPGK YEAYISKDDE LNKSTVYDTE RPDTKKIKMD VKVLQTNGAF SLLEIELITG
RSHQLRAHLA HLGNPIVGDF KYGDNKMNSF FENKFGLTYQ FLYAYKVTFK EVPEKFDYLK
NKTIAQGLPP MFKKIKKDVF KFRI
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