Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1413 |
Symbol | spoVB |
ID | 4203721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1593026 |
End bp | 1594642 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638082293 |
Product | stage V sporulation protein B |
Protein accession | YP_695858 |
Protein GI | 110800053 |
COG category | [R] General function prediction only |
COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.208509 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAGC AGTCTATAAC TAAAGGCTTT GCAATACTTT CTATTGCAAG CATAGTTGCT AAATTATTAT CTTTAATTTA TGTACCTTTT CTTACTAGAA TTGTAGGAAG TGTTGGTATG GGTATATATG GCAAAACCTA TGACATATTT GTTTTTGTGT ATGCTTTAAC AAATGTAGGT TTACAAACGG CCATATCAAA ATATGTTTCA GAGTTAGATG CAGTTGGCAA TTACAAAGAT GCCTTAAGAG CATTTAAGAT TTCAAGAGCA TTTTTACTTG TAGTTGGTAC AATATTTACT ATAGTTTTAA TGTTAAGTGC TAATTTTATA GCAAGTATGA GTCAGACTCC ACAAATGGTT TATCCAATAA TTTTCTTAGC ACCAACAATT ATGATAACAA CAGTCTTAGT TACTTATAAA GGATATTTCC AAGGAAGATC TCAAGCTACA CCAATAGCTA TAGCAACGGT TATTGAACAG GTTGCAAATG TATTTTTAAG TTTATTATGT GCATATTTCC TTATAAAGAA AAGTGTATCT TTAGGGGTTG CAGGAGGAAC TGTAGGATCT TCTGCTGGAG CCTTAATGGC GGTATTATAT TTAATATACA TATATAATAT ATATGGAGTT GAAAAAGAGG CTAAGAGAAA ACAAGAGCCT GGAGTTAGAA GAATTACAGG TAAAAAAATA GCAAGAACCT TATTTAAATA TGGATTGCCA ATAACTCTTA GTACTGGACT TCAAAACTTA GGAAATATAA TAGATATGTT AACTGTAAGT AATAGACTTG TTGATGCAGC TAACTTTTCT CAAAGTGATG CTAATGCACT TTATGGATAT TTTTCAACAA GATATAAGAT TTTAATAAAT GTTCCAATGG TATTTATAAC TTCTTTAGGA TACATGGCAT TACCTGCAAT ATCAAGAGCA TATGCTTTAA AAGATAAAAA AGAGATAAAA AGTAAGATTA ATTTCTCTAT GAGAGTTACA TATCTTTTAT CAATACCATC AGCCTTTGGA TTAGCTTTAT TAAGTGAAAA TATATATAGA TATATTTTTG CAGATTCAAA TGGATATAAG ATGATGGTAA TAGGTGCCGC TATGATACCA TTAACGGCAA TAGTTCTTAT GCAAAATGTA ATACTTCAAA GTGTAAGTCA ATTTTACTAT GTATTATTTA CCTTAGCTCT TAGTATTGTA GTGAAGTTTA CATTAAATAT GACTTTAGTT GCAAATCCAG ATATAAATAT TTATGGAGCT GTAATTTCTG GAATGGTGGC TTTCGTAATT TCTTTAGTAC TTAATCACTT TAGAATGAAA AAAACATTAA AGATGAAAAT ATCAATGTTA AAGTATGCAT TAAAACCTTT ATTAGCATCA ATATACATGG GTATAGGAAT AATACTTAGC AAATATGTAA TATCTTTATT TATAGATTTT GATAAGTTAA GTTTAATATT AGGCATAGCT ATATTACTAG TAATTATAGC TATAGGTGCA TTTATGTATC TTCATGCTAT TATAATTCTA GGAGGAATTA AAAAGGAAGA TATAGAAGAA ATTTCACCTA AACTTTTAAG AGTTATGCCA AGATTTTTAA GAAAAAATAT AAAATAA
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Protein sequence | MKEQSITKGF AILSIASIVA KLLSLIYVPF LTRIVGSVGM GIYGKTYDIF VFVYALTNVG LQTAISKYVS ELDAVGNYKD ALRAFKISRA FLLVVGTIFT IVLMLSANFI ASMSQTPQMV YPIIFLAPTI MITTVLVTYK GYFQGRSQAT PIAIATVIEQ VANVFLSLLC AYFLIKKSVS LGVAGGTVGS SAGALMAVLY LIYIYNIYGV EKEAKRKQEP GVRRITGKKI ARTLFKYGLP ITLSTGLQNL GNIIDMLTVS NRLVDAANFS QSDANALYGY FSTRYKILIN VPMVFITSLG YMALPAISRA YALKDKKEIK SKINFSMRVT YLLSIPSAFG LALLSENIYR YIFADSNGYK MMVIGAAMIP LTAIVLMQNV ILQSVSQFYY VLFTLALSIV VKFTLNMTLV ANPDINIYGA VISGMVAFVI SLVLNHFRMK KTLKMKISML KYALKPLLAS IYMGIGIILS KYVISLFIDF DKLSLILGIA ILLVIIAIGA FMYLHAIIIL GGIKKEDIEE ISPKLLRVMP RFLRKNIK
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