| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0025 |
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| Symbol | addA |
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| ID | 4202627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 29580 |
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| End bp | 33395 |
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| Gene Length | 3816 bp |
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| Protein Length | 1271 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638080900 |
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| Product | ATP-dependent nuclease, subunit A |
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| Protein accession | YP_694494 |
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| Protein GI | 110799297 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGACTA AATGGACTGA AGAACAAGAA TTAGCTATAA ATACTAGAAA ATGCAACCTT
TTAGTAGCAG CTGCTGCTGG ATCAGGAAAA ACTGCTGTAT TAGTTGAAAG AATTATAAAA
ATGATAACAG AGGGAGAAAA TCCTGTTGAT ATAGATAAGT TATTAGTTGT TACATTTACT
AATGCTGCTG CCTCTGAAAT GAGAGAGAGA ATAGGTGATG CAATATCTAA AGCTTTGGAG
AAAGATCCTA GTTCTGAAGC GCTTCAAAGA CAATTAGCTC TTTTAAATAG AGCTAGTATA
ACAACTATGC ATTCTTTTTG TTTAGAAGTT ATAAAAAATA ATTTCCACTT AATAGACTTA
GATCCTGGGT TTAGAATAGG AGATCAAACA GAATGTGAAC TTATAAAGCA AGATATTTTA
GCTGACCTTT TTGAGGATAT GTATGCTAAG GATGATGAAT GCTTTAAAGA TTTAGTTGAA
GCTTATGGTG GAAGTAAAAG TGATGATAAT TTAAATAGCA TAATATTAAA ATTCTATAAT
TTTATAATGA GTGGTCCTTG GCCAGAGACT TGGTTAAAGG ATAAGGTGGA GGAATTTAAC
ATAAATTCTA TAGAGGAACT TGAAGGTAAG AAGTGGATAG AGGTCTTAAA AGAAAGTATA
ATTTTAGATT TAAATAATGC CTATTCAATG CTTACTCAAG CTAGGGATAT AGCTGAAATG
GGGGGAGGAC TTGAGCCTTA TTTAGTGAAT ATATATCCTG AAATAATTCA GGTTGAAGAG
CTTAGAATTG CTTTAAGTGA AGGAATAGTA AAGTTTTATA ATAAGCTTAT GGGAGCAAGC
TTTGGAAGGC TAAAATCAGT TAGAAAAGCT AGTGTCGATG ATGAAAGAGC ATTGGAAAAA
GCTAAAAGTC TTAGAGATGA AAGTAAAAAA ATAATAGAGA ATTTAAGGGA TAATGTTTTT
GAAACTTCTT TAGAAGAAGC TGTTTTAGGA ATGAAAAAGA TGTATCCTTT AATGAAATGT
TTAAGTGGTT TAGTAATTGA ATTTTCTAAT AGGTATAGAG ATAAAAAAAG AGAAAAGGAT
ATTTTGGATT TTAATGACTT AGAGCATCTT TGCTTAGAAA TATTAATAGA TAAAGATGAA
GAGGGGAATA TAAAACCTTC ACAGGTTGCC TTAGAATTTA AGGATAAATT TGAAGAAGTT
TTAGTTGATG AATATCAAGA TAGTAATACA ATTCAAGAAA CAATTGTAGG AATGGTTTCA
AGAAGAGATG TAGAAAATCC TAATGTATTT ATGGTTGGAG ATGTTAAACA AAGTATATAT
AAGTTTAGAC AGGCAAATCC AGAACTTTTC TTAGAGAAAT ATATTAATTA TAGAGAGTTT
GAAGATTCTA ATAGAAAAAT AATGCTTTAT AAAAACTTTA GAAGTAGAGA AGAAATAATA
AATGGAGTAA ACTATATCTT TAAAACCTTA ATGAGTAATA CTGTAGGAGA GCTTGAATAT
GATGAAAAAG AGGCTTTAAA CCTAGGGGCT TCCTATGGGG AGTTAAATGA GGAAAATGTA
GAGAAAGAAT ATATAGATGA AATAGAAAAT CTAAAGGTTG CTGGTGATAT AGAGCTAAAT
ATATTAAATA AAGCAGGCAA TAAGGAATAT AGAGATGATG ATGAACTAGG AGAAGAGGAA
GAAGATTTAG ATAGCATACA GTTAGAAGCT AGAATAATTG GCAAAAAGAT TAAGGAGCTA
ATGAATCCTG AAGATGGAAG TCACTATATG GTTTTTGATA AGGATTTGGG GAAATATAGA
AGGATTAAAT ACAAGGATAT TGTTATCTTA CTTAGAGCAA CTAAGAACTG GGCAGAAACC
TTTGTTGATG AGCTAGGGAC TTATGGAATA CCTGTTTATG CTGACACAGG AACAGGATAT
TTTCAAACTA TTGAAATCAG AACTATATTA GCCTTATTAC ACATAATAGA TAATCCAATG
CAGGATATTT ATATATTATC TGCCTTACGT TCACCAATAT TTTCATTTAC ATCTGAAGAA
TTTGCAGATT TAAGATTATT AAATAAAGAT AAATACTTCT TTGAAATAAT AAAGGAAGTT
GTAGATGGAA TTTATGATGA AAGTATATCT AAGGAATTAA AAGGTAAGTG TAAGTACTTC
TTAGATTATT TAAATAAGTG GAGAGAAAAG GCAGCTTATA TGCCAATAGA TGAATTTATT
TGGTTCTTAT ATTCTGATAC ATCATACTAT GGATATGTTG GAACAATGCC AAATGGAGTT
CAACGTCAGG CAAATTTAAG AATACTATTC CAAAGAGCAA AGCAATATGA ATCAACTAGT
TTTAAGGGAT TATTTAATTT TATAAACTTC ATAAATAAGC TTAAAAAGTC TTCTGGTGAT
ATGGGAAGTG CAAAGATTCT TGGAGAAAAT GAGAATGTTG TAAGGATAAT GAGTATTCAC
AAGAGTAAGG GGCTAGAGTT CCCAGTTGTC ATATTAGGTG GAACAGGAAA GCAATTTAAC
AAGATGGACT TAAGAGAAGA TATACTTCTT CATGAAACCT TAGGCATAGG AACAAATTGT
ATAGATGTTA AGAAGAGAAT AAAGTATGAT ACTCTTCAAA AGCATGCTAT AAAGAAAAAA
TGTGAATTAG AAGTTTTATC AGAGGAAATG AGGATACTTT ATGTTGCCTT TACAAGAGCT
AAGGAAAAAT TAATTATAAC TGGTGCTGTA TCAGACTTAG AAAAGTCTTG TGAAAATTGG
TGCAAAGCTT CAGCTTCTTC AGGGGATAAT AGAATAAATC CTGGAAATGT TTTAAAGGGA
AAGAGTTATT TAGATTGGAT TTGCATGGCT TTAACAAAAC ATAAAGATGG AGATGCCATA
AGAAATATTG GTAATGGAGA TATAACTTTA AATTTAGATG ATAAATCTAA TTGGAGTTTT
AAAAGCTGGG ACAGAAGTGA GCTTTTAGAA ACAAATAACA ATAAAAAAGA AAAAAATAAT
ATTGATATTT TTGAAAGTAA TAATTGGATT GAATCTAAAA AAGATATAAA AGAAGTTATA
GAAATAAGAG ATAGACTAGG CTTTAAATAT AAATATATAG AGTCTTGTAA TACTCCTTCA
AATATTTCTG TAACTGAATT AAAGAGAGCT CATCAAGAAG AAGAGTTTAT GCAAGAAAGT
TATAATATTA TTGATAATGA AAGTAATGAA GAAAATAAAA AAGAAAAAAT AAAAAGAAAA
CCAAGATTTA TGGAGGAAAG ACAGGAAGAA TTCTCAGCAG CTAAGAAGGG GACTATAACT
CACTTTGTAA TGCAACATAT TGATTTAGAT AAGGTAACTT ATATAGATGA AATAAGAGAA
GAAGTTCTTA AAATGGTTAA AAAAGAACTT TTAACAGAAG AAGAAGGAAA AGTGGTAAAT
GTATTTAAAA TACAGAAATT CTTTAAAAGT GATTTAGGTC AGAGAATGTT AAACTCATAT
AAATCTGGTA AAAAGGTATA TAGAGAATTA CCTTTTATAA CTGAGATTCC AAGTAGTATT
ATAGAAAAAA ATCTTGATCC TAAAATCTAT GGAGAGGAAA AAGTAAGATT ACAGGGTATT
ATAGATGCTT TCTTTGAGGA AGAAGATGGA TATGTTCTTT TAGATTATAA AACTGATTAT
GTTAAAGAGG GAGAGGAAGA AGACTTCATA AATAAATATA AAATTCAAAT TAACTTATAT
AAAGACACAT TAAATAAAAT TTTAGGGGAA GAAGTTAAGG AAGCTTATCT GTATTCCTTC
TATCTTGAAA AAGAATTAAA AATAAGCAAG GAATAA
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| Protein sequence | MGTKWTEEQE LAINTRKCNL LVAAAAGSGK TAVLVERIIK MITEGENPVD IDKLLVVTFT
NAAASEMRER IGDAISKALE KDPSSEALQR QLALLNRASI TTMHSFCLEV IKNNFHLIDL
DPGFRIGDQT ECELIKQDIL ADLFEDMYAK DDECFKDLVE AYGGSKSDDN LNSIILKFYN
FIMSGPWPET WLKDKVEEFN INSIEELEGK KWIEVLKESI ILDLNNAYSM LTQARDIAEM
GGGLEPYLVN IYPEIIQVEE LRIALSEGIV KFYNKLMGAS FGRLKSVRKA SVDDERALEK
AKSLRDESKK IIENLRDNVF ETSLEEAVLG MKKMYPLMKC LSGLVIEFSN RYRDKKREKD
ILDFNDLEHL CLEILIDKDE EGNIKPSQVA LEFKDKFEEV LVDEYQDSNT IQETIVGMVS
RRDVENPNVF MVGDVKQSIY KFRQANPELF LEKYINYREF EDSNRKIMLY KNFRSREEII
NGVNYIFKTL MSNTVGELEY DEKEALNLGA SYGELNEENV EKEYIDEIEN LKVAGDIELN
ILNKAGNKEY RDDDELGEEE EDLDSIQLEA RIIGKKIKEL MNPEDGSHYM VFDKDLGKYR
RIKYKDIVIL LRATKNWAET FVDELGTYGI PVYADTGTGY FQTIEIRTIL ALLHIIDNPM
QDIYILSALR SPIFSFTSEE FADLRLLNKD KYFFEIIKEV VDGIYDESIS KELKGKCKYF
LDYLNKWREK AAYMPIDEFI WFLYSDTSYY GYVGTMPNGV QRQANLRILF QRAKQYESTS
FKGLFNFINF INKLKKSSGD MGSAKILGEN ENVVRIMSIH KSKGLEFPVV ILGGTGKQFN
KMDLREDILL HETLGIGTNC IDVKKRIKYD TLQKHAIKKK CELEVLSEEM RILYVAFTRA
KEKLIITGAV SDLEKSCENW CKASASSGDN RINPGNVLKG KSYLDWICMA LTKHKDGDAI
RNIGNGDITL NLDDKSNWSF KSWDRSELLE TNNNKKEKNN IDIFESNNWI ESKKDIKEVI
EIRDRLGFKY KYIESCNTPS NISVTELKRA HQEEEFMQES YNIIDNESNE ENKKEKIKRK
PRFMEERQEE FSAAKKGTIT HFVMQHIDLD KVTYIDEIRE EVLKMVKKEL LTEEEGKVVN
VFKIQKFFKS DLGQRMLNSY KSGKKVYREL PFITEIPSSI IEKNLDPKIY GEEKVRLQGI
IDAFFEEEDG YVLLDYKTDY VKEGEEEDFI NKYKIQINLY KDTLNKILGE EVKEAYLYSF
YLEKELKISK E
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