Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CA2559_00025 |
Symbol | |
ID | 9295481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Croceibacter atlanticus HTCC2559 |
Kingdom | Bacteria |
Replicon accession | NC_014230 |
Strand | - |
Start bp | 32692 |
End bp | 36504 |
Gene Length | 3813 bp |
Protein Length | 1270 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | |
Product | DNA-directed RNA polymerase beta subunit |
Protein accession | YP_003714775 |
Protein GI | 298206596 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGCAA CGCAGACTGA AAGATTGAAT TTCTCAAATG TGAAGAATAG ACCTGATTAT CCAGATTTCT TGGATATTCA AATACAGTCT TTCCAAGACT TCTTCCAATT GGAAACAAAA TCTGATGAGC GGGAAGCAGA AGGTCTTTAC AAGACCTTTA TGGAAAACTT CCCTATTACG GATACCCGTA ATCAATTTGT ATTAGAGTTT TTAGATTATT TCGTGGACCC GCCAAGATAT TCTATTCAAG AATGTATTGA ACGCGGTTTA ACATACAGTG TACCACTTAA GGCAAGACTT AAGTTGTATT GTACAGATCC AGAACACGAA GATTTTGAAA CCATCGTACA GGACGTGTAC CTTGGTACTA TTCCTTATAT GACACCAAGT GGTACTTTTT GTATCAATGG TGCAGAACGT GTTGTTGTTT CTCAATTACA CCGTTCTCCT GGTGTATTCT TTGGACAATC TTTCCACGCC AATGGAACTA AATTATACTC TGCAAGAGTA ATTCCTTTTA AAGGATCTTG GATAGAGTTT GCTACAGATA TAAACAGCGT AATGTATGCT TATATCGATA GAAAGAAAAA ATTACCTGTA ACAACACTTT TCCGTGCAAT AGGTTTCGAA AGAGATAAAG ATATTCTTGA AATATTTGAC CTAGCTGAAG AAGTAAAAGT TACTAAATCT GGTCTTAAAA AAGTACTTGG CCGTAAATTG GCTGCACGTG TTTTAAATAC GTGGTATGAA GATTTCGTAG ATGAAGATAC TGGTGAAGTT GTTTCAATTG AAAGAAACGA AATTGTATTA GACCGTGATA CAGAATTAGA AAAAGAGCAC ATAGAAGAAA TTCTTGAGAC TGGTACTAAA ACTATTCTTT TACATAAAGA AGACAATAGT ACTGGTGATT ATGCAATTAT TCATAATACA CTACAAAAAG ATCCAACAAA CTCTGAAAAA GAAGCTGTTG AGCATATCTA TCGTCAATTA CGTAATGCAG AGCCGCCAGA TGAGGAAACT GCACGTGGTA TTATAGATAA GCTATTCTTT AGTGACCAAC GCTACAACTT AGGTGAGGTA GGTCGTTATA GAATGAACAA AAAACTTGGT TTAGATATCG CTATGGATAA GCAAGTGCTT ACCAAAGAGG ATATTATTAC AATCATAAAA TATTTAATTG AGTTAATTAA CTCAAAAGCT GAGATTGATG ATATTGATCA CTTATCTAAC CGTCGTGTAC GTACAGTAGG TGAGCAATTA TCACAACAAT TTGGTGTTGG TCTTGCACGT ATGGCTCGTA CTATTCGTGA GCGTATGAAC GTTCGTGATA ACGAGGTCTT TACTCCTATA GATTTGATTA ATGCAAAGAC TTTATCGTCT GTAATTAATT CTTTCTTTGG TACAAACCAA CTTTCTCAAT TTATGGATCA AACCAATCCA CTAGCAGAGA TAACGCACAA GCGTCGTCTT TCAGCTCTTG GACCTGGTGG TCTTTCTCGT GAGCGTGCAG GTTTCGAAGT TCGAGATGTA CACTACACAC ACTATGGAAG ACTTTGTCCT ATTGAAACAC CAGAAGGACC TAACATTGGT CTTATTTCTT CTTTGTCTGT ATATGCTAAA GTAAATGCTT TAGGATTTAT TGAAACGCCA TACAGAAAAG TAGATGATGG TAAAATTAAT TTAGATGAAT CACCAATTTA CCTTTCTGCA GAAGAAGAGG AAGGAATGAA AATTGCACAA GCAAACATTC CATTAGACGA TAAAGGTAAT ATTGAGGCAG AACGTGTAAT TGCTCGTCTT GAAGGAGATT TCCCAGTGGA AGATCCTAAG AACGTAAATT ATATAGATGT TGCTCCAAAC CAGATATCAT CTATTTCTGC ATCTCTTATT CCGTTCCTAG AACATGATGA TGCAAACCGT GCCTTGATGG GATCTAACAT GATGCGTCAA GCAGTACCAT TATTAAGAGT AGATTCTCCA ATTGTAGGTA CAGGTCTTGA GCGTCAGGTA GCATCAGATT CTAGAGTGCT TATTAATGCA GAAGGTGCAG GTACTGTAGA GTATGTTGAT GCTAATATGG TAACTATTAA GTATGATAGA TCAGAAGAAG AACGTCAAGT TAGTTTTGAT AGTGATTCAA AATCTTACAA CTTAATTAAA TTCCGTAAAA CTAACCAAGG TACATCTATC AACCTTAAGC CAATTGTAAA AGTTGGTGAC CGTGTTGAAA GAGGACAAGT ACTTTGTCAA GGATATGCAA CAGAAGCTGG AGAACTTGCT TTAGGTAGAA ATATGAAAGT AGCCTTTATG CCTTGGAAAG GGTATAACTT TGAGGATGCA ATTGTAATTT CAGAAAAAGT AGTACGTGAA GATATATTTA CATCTATTCA CGTAGATGAA TATTCTTTAG ATGTTAGAGA TACAAAATTA GGTAATGAAG AATTAACTAA TGACATACCA AACGTTTCAG AAGAGGCTAC TAAAGACCTT GATGAATATG GTATGATTCG TATTGGTGCA GAGGTTAAGC CTGGAGATAT ATTAATTGGA AAAATTACTC CAAAAGGAGA AAGTGATCCA ACTCCAGAAG AAAAATTACT TCGCGCAATA TTTGGTGATA AAGCAGGAGA TGTAAAAGAT GCATCTTTAA AAGCATCGCC ATCTCTTAAC GGTGTTGTAA TAGATAAGAA ATTGTTTGAA AGAGCAATTA AAGATAAGCG TAAGAGAGCA CAAGATAAAG AAGATATAGC AAGACTTGAA GTTGAGTATG ACGCTAAATT TGATGACCTT AAAGCTGTTT TAGTTGAAAA GTTATTTAAC CTAATAGGTG GAAAAACAGC ACAAGGTGTT AAGAATGATT TAGGGGAAGA CATTTTACCA AAAGGTAAGA AGTATACTTT AAAAATGCTT AACTCTGTTG AAGATTATAC TCACCTTACT CAAGGTACGT GGACTACAGA TGATGAGTTA AATAGTATGG TTGCAGACTT AATCCATAAT TATAAGATTA AGGAAAACGA CTTACAAGGT AACTTAAGAC GTGAGAAATT TACTATTTCT GTAGGAGATG AGTTGCCAGC AGGTATTATC AAGTTAGCAA AAATTTATAT TGCTAAAAAG CGTAAGCTTA AGGTTGGTGA TAAAATGGCA GGTCGTCACG GTAACAAAGG TATTGTAGCA CGTATTGTAC GTGAAGAAGA TATGCCTTTC TTAGAAGACG GAACGCCAGT AGATATCGTA CTTAACCCAC TTGGTGTACC ATCTCGTATG AACATCGGGC AAATTTACGA AACAGTTCTT GGTTGGGCAG GACAAAAATT AGGACGCAAG TTTGCTACTC CAATTTTTGA CGGTGCAACT TTAGACCAAA TAAATGAATT AACAGACGAA GCAGGTATTC CTCGTTTTGG CCATACACAT TTATATGATG GTGGTACAGG AGACCGTTTT GATCAACCAG CAACAGTAGG TGTTATCTAT ATGTTGAAGT TAGGTCACAT GGTAGATGAT AAGATGCACG CTCGTTCTAT AGGTCCTTAC TCATTAATTA CACAACAACC ATTAGGTGGT AAAGCACAAT TTGGTGGTCA GCGTTTTGGT GAGATGGAGG TTTGGGCTCT TGAAGCATAT GGTGCATCTA GCACTCTTCG TGAGATCCTT ACAGTAAAAT CTGATGATGT TATTGGTAGA GCAAAAACTT ACGAAAGTAT AGTAAAAGGT GAGCCAATGC CAGAACCAGG ATTGCGAGAA TCTTTTAACG TGTTAATGCA CGAATTAAAA GGATTAGGAC TTGATATTCG ACTCGAAGAA TAA
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Protein sequence | MLATQTERLN FSNVKNRPDY PDFLDIQIQS FQDFFQLETK SDEREAEGLY KTFMENFPIT DTRNQFVLEF LDYFVDPPRY SIQECIERGL TYSVPLKARL KLYCTDPEHE DFETIVQDVY LGTIPYMTPS GTFCINGAER VVVSQLHRSP GVFFGQSFHA NGTKLYSARV IPFKGSWIEF ATDINSVMYA YIDRKKKLPV TTLFRAIGFE RDKDILEIFD LAEEVKVTKS GLKKVLGRKL AARVLNTWYE DFVDEDTGEV VSIERNEIVL DRDTELEKEH IEEILETGTK TILLHKEDNS TGDYAIIHNT LQKDPTNSEK EAVEHIYRQL RNAEPPDEET ARGIIDKLFF SDQRYNLGEV GRYRMNKKLG LDIAMDKQVL TKEDIITIIK YLIELINSKA EIDDIDHLSN RRVRTVGEQL SQQFGVGLAR MARTIRERMN VRDNEVFTPI DLINAKTLSS VINSFFGTNQ LSQFMDQTNP LAEITHKRRL SALGPGGLSR ERAGFEVRDV HYTHYGRLCP IETPEGPNIG LISSLSVYAK VNALGFIETP YRKVDDGKIN LDESPIYLSA EEEEGMKIAQ ANIPLDDKGN IEAERVIARL EGDFPVEDPK NVNYIDVAPN QISSISASLI PFLEHDDANR ALMGSNMMRQ AVPLLRVDSP IVGTGLERQV ASDSRVLINA EGAGTVEYVD ANMVTIKYDR SEEERQVSFD SDSKSYNLIK FRKTNQGTSI NLKPIVKVGD RVERGQVLCQ GYATEAGELA LGRNMKVAFM PWKGYNFEDA IVISEKVVRE DIFTSIHVDE YSLDVRDTKL GNEELTNDIP NVSEEATKDL DEYGMIRIGA EVKPGDILIG KITPKGESDP TPEEKLLRAI FGDKAGDVKD ASLKASPSLN GVVIDKKLFE RAIKDKRKRA QDKEDIARLE VEYDAKFDDL KAVLVEKLFN LIGGKTAQGV KNDLGEDILP KGKKYTLKML NSVEDYTHLT QGTWTTDDEL NSMVADLIHN YKIKENDLQG NLRREKFTIS VGDELPAGII KLAKIYIAKK RKLKVGDKMA GRHGNKGIVA RIVREEDMPF LEDGTPVDIV LNPLGVPSRM NIGQIYETVL GWAGQKLGRK FATPIFDGAT LDQINELTDE AGIPRFGHTH LYDGGTGDRF DQPATVGVIY MLKLGHMVDD KMHARSIGPY SLITQQPLGG KAQFGGQRFG EMEVWALEAY GASSTLREIL TVKSDDVIGR AKTYESIVKG EPMPEPGLRE SFNVLMHELK GLGLDIRLEE
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